Uses of Class
org.obolibrary.oboformat.parser.OBOFormatParserException

Packages that use OBOFormatParserException
org.obolibrary.obo2owl   
org.obolibrary.oboformat.parser   
org.obolibrary.oboformat.writer   
 

Uses of OBOFormatParserException in org.obolibrary.obo2owl
 

Methods in org.obolibrary.obo2owl that throw OBOFormatParserException
static void Obo2Owl.convertURL(String iri, String outFile)
          Static convenience method which: (1) creates an Obo2Owl bridge object (2) parses an obo file from a URL (3) converts that to an OWL ontology (4) saves the OWL ontology as RDF/XML
static void Obo2Owl.convertURL(String iri, String outFile, String defaultOnt)
          See Obo2Owl.convertURL(String iri, String outFile)
 

Uses of OBOFormatParserException in org.obolibrary.oboformat.parser
 

Methods in org.obolibrary.oboformat.parser that throw OBOFormatParserException
protected  void OBOFormatParser.forceParseNlOrEof()
           
 OBODoc OBOFormatParser.parse(BufferedReader reader)
           
 OBODoc OBOFormatParser.parse(File file)
          Parses a local file to an OBODoc
 OBODoc OBOFormatParser.parse(String fn)
          Parses a local file or URL to an OBODoc
 OBODoc OBOFormatParser.parse(URL url)
          Parses a remote URL to an OBODoc
 void OBOFormatParser.parseEntityFrame(OBODoc obodoc)
           
 void OBOFormatParser.parseEOL(Clause cl)
           
protected  void OBOFormatParser.parseHeaderClause(Frame h)
           
protected  boolean OBOFormatParser.parseHeaderClauseNl(Frame h)
          header-clause ::= format-version-TVP | ...
 void OBOFormatParser.parseHeaderFrame(Frame h)
           
protected  void OBOFormatParser.parseIdLine(Frame f)
           
 void OBOFormatParser.parseOBODoc(OBODoc obodoc)
           
protected  void OBOFormatParser.parseOneOrMoreWs()
           
 void OBOFormatParser.parseTermFrame(OBODoc obodoc)
          term-frame ::= nl* '[Term]' nl id-Tag Class-ID EOL { term-frame-clause EOL }
 void OBOFormatParser.parseTermFrameClause(Clause cl)
           
protected  void OBOFormatParser.parseTermFrameClauseEOL(Frame f)
           
 void OBOFormatParser.parseTypedefFrame(OBODoc obodoc)
          Typedef-frame ::= nl* '[Typedef]' nl id-Tag Class-ID EOL { Typedef-frame-clause EOL }
 void OBOFormatParser.parseTypedefFrameClause(Clause cl)
           
protected  void OBOFormatParser.parseTypedefFrameClauseEOL(Frame f)
           
protected  void OBOFormatParser.parseUnquotedString(Clause cl)
           
 OBODoc OBOFormatParser.parseURL(String urlstr)
          Parses a remote URL to an OBODoc
protected  void OBOFormatParser.parseWs()
           
protected  void OBOFormatParser.parseZeroOrMoreWsOptCmtNl()
           
 

Uses of OBOFormatParserException in org.obolibrary.oboformat.writer
 

Methods in org.obolibrary.oboformat.writer that throw OBOFormatParserException
 void OBOFormatWriter.write(BufferedReader reader, BufferedWriter writer)
           
 void OBOFormatWriter.write(String fn, BufferedWriter writer)
           
 void OBOFormatWriter.write(URL url, BufferedWriter writer)
           
 



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