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Packages that use OBOFormatParserException | |
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org.obolibrary.obo2owl | |
org.obolibrary.oboformat.parser | |
org.obolibrary.oboformat.writer |
Uses of OBOFormatParserException in org.obolibrary.obo2owl |
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Methods in org.obolibrary.obo2owl that throw OBOFormatParserException | |
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static void |
Obo2Owl.convertURL(String iri,
String outFile)
Static convenience method which: (1) creates an Obo2Owl bridge object (2) parses an obo file from a URL (3) converts that to an OWL ontology (4) saves the OWL ontology as RDF/XML |
static void |
Obo2Owl.convertURL(String iri,
String outFile,
String defaultOnt)
See Obo2Owl.convertURL(String iri, String outFile) |
Uses of OBOFormatParserException in org.obolibrary.oboformat.parser |
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Methods in org.obolibrary.oboformat.parser that throw OBOFormatParserException | |
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protected void |
OBOFormatParser.forceParseNlOrEof()
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OBODoc |
OBOFormatParser.parse(BufferedReader reader)
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OBODoc |
OBOFormatParser.parse(File file)
Parses a local file to an OBODoc |
OBODoc |
OBOFormatParser.parse(String fn)
Parses a local file or URL to an OBODoc |
OBODoc |
OBOFormatParser.parse(URL url)
Parses a remote URL to an OBODoc |
void |
OBOFormatParser.parseEntityFrame(OBODoc obodoc)
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void |
OBOFormatParser.parseEOL(Clause cl)
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protected void |
OBOFormatParser.parseHeaderClause(Frame h)
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protected boolean |
OBOFormatParser.parseHeaderClauseNl(Frame h)
header-clause ::= format-version-TVP | ... |
void |
OBOFormatParser.parseHeaderFrame(Frame h)
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protected void |
OBOFormatParser.parseIdLine(Frame f)
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void |
OBOFormatParser.parseOBODoc(OBODoc obodoc)
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protected void |
OBOFormatParser.parseOneOrMoreWs()
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void |
OBOFormatParser.parseTermFrame(OBODoc obodoc)
term-frame ::= nl* '[Term]' nl id-Tag Class-ID EOL { term-frame-clause EOL } |
void |
OBOFormatParser.parseTermFrameClause(Clause cl)
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protected void |
OBOFormatParser.parseTermFrameClauseEOL(Frame f)
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void |
OBOFormatParser.parseTypedefFrame(OBODoc obodoc)
Typedef-frame ::= nl* '[Typedef]' nl id-Tag Class-ID EOL { Typedef-frame-clause EOL } |
void |
OBOFormatParser.parseTypedefFrameClause(Clause cl)
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protected void |
OBOFormatParser.parseTypedefFrameClauseEOL(Frame f)
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protected void |
OBOFormatParser.parseUnquotedString(Clause cl)
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OBODoc |
OBOFormatParser.parseURL(String urlstr)
Parses a remote URL to an OBODoc |
protected void |
OBOFormatParser.parseWs()
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protected void |
OBOFormatParser.parseZeroOrMoreWsOptCmtNl()
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Uses of OBOFormatParserException in org.obolibrary.oboformat.writer |
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Methods in org.obolibrary.oboformat.writer that throw OBOFormatParserException | |
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void |
OBOFormatWriter.write(BufferedReader reader,
BufferedWriter writer)
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void |
OBOFormatWriter.write(String fn,
BufferedWriter writer)
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void |
OBOFormatWriter.write(URL url,
BufferedWriter writer)
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