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Packages that use Clause | |
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org.obolibrary.obo2owl | |
org.obolibrary.oboformat.diff | |
org.obolibrary.oboformat.model | |
org.obolibrary.oboformat.parser | |
org.obolibrary.oboformat.writer |
Uses of Clause in org.obolibrary.obo2owl |
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Methods in org.obolibrary.obo2owl that return types with arguments of type Clause | |
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static List<Clause> |
Owl2Obo.normalizeRelationshipClauses(List<Clause> clauses)
Join clauses and its QualifierValue which have the same
relationship type and target. |
Methods in org.obolibrary.obo2owl with parameters of type Clause | |
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protected boolean |
Owl2Obo.handleDuplicateClause(Frame frame,
Clause clause)
Handle a duplicate clause in a frame during translation. |
protected org.semanticweb.owlapi.model.OWLAxiom |
Obo2Owl.trGenericClause(org.semanticweb.owlapi.model.OWLAnnotationSubject sub,
String tag,
Clause clause)
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Method parameters in org.obolibrary.obo2owl with type arguments of type Clause | |
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static List<Clause> |
Owl2Obo.normalizeRelationshipClauses(List<Clause> clauses)
Join clauses and its QualifierValue which have the same
relationship type and target. |
Set<org.semanticweb.owlapi.model.OWLAxiom> |
Obo2Owl.trTermFrameClauses(org.semanticweb.owlapi.model.OWLClass cls,
Collection<Clause> clauses,
String t)
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Uses of Clause in org.obolibrary.oboformat.diff |
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Methods in org.obolibrary.oboformat.diff that return Clause | |
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Clause |
Diff.getClause1()
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Clause |
Diff.getClause2()
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Methods in org.obolibrary.oboformat.diff with parameters of type Clause | |
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void |
Diff.setClause1(Clause clause1)
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void |
Diff.setClause2(Clause clause2)
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Constructors in org.obolibrary.oboformat.diff with parameters of type Clause | |
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Diff(String ftype,
String type,
Frame f1,
Frame f2,
Clause c,
int n)
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Uses of Clause in org.obolibrary.oboformat.model |
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Fields in org.obolibrary.oboformat.model with type parameters of type Clause | |
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protected Collection<Clause> |
Frame.clauses
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Methods in org.obolibrary.oboformat.model that return Clause | |
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Clause |
Frame.getClause(OBOFormatConstants.OboFormatTag tag)
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Clause |
Frame.getClause(String tag)
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Methods in org.obolibrary.oboformat.model that return types with arguments of type Clause | |
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Collection<Clause> |
Frame.getClauses()
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Collection<Clause> |
Frame.getClauses(OBOFormatConstants.OboFormatTag tag)
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Collection<Clause> |
Frame.getClauses(String tag)
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Methods in org.obolibrary.oboformat.model with parameters of type Clause | |
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void |
Frame.addClause(Clause cl)
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Method parameters in org.obolibrary.oboformat.model with type arguments of type Clause | |
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void |
Frame.setClauses(Collection<Clause> clauses)
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Uses of Clause in org.obolibrary.oboformat.parser |
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Methods in org.obolibrary.oboformat.parser with parameters of type Clause | |
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void |
OBOFormatParser.parseEOL(Clause cl)
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void |
OBOFormatParser.parseTermFrameClause(Clause cl)
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void |
OBOFormatParser.parseTypedefFrameClause(Clause cl)
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protected void |
OBOFormatParser.parseUnquotedString(Clause cl)
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Uses of Clause in org.obolibrary.oboformat.writer |
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Methods in org.obolibrary.oboformat.writer with parameters of type Clause | |
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void |
OBOFormatWriter.write(Clause clause,
BufferedWriter writer,
OBOFormatWriter.NameProvider nameProvider)
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void |
OBOFormatWriter.writeDef(Clause clause,
BufferedWriter writer)
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void |
OBOFormatWriter.writePropertyValue(Clause clause,
BufferedWriter writer)
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void |
OBOFormatWriter.writeSynonym(Clause clause,
BufferedWriter writer)
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Method parameters in org.obolibrary.oboformat.writer with type arguments of type Clause | |
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static void |
OBOFormatWriter.sortTermClauses(List<Clause> clauses)
Sort a list of term frame clauses according to in the OBO format specified tag and value order. |
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