public class GolrSeedingDataProvider extends Object implements SeedingDataProvider
Constructor and Description |
---|
GolrSeedingDataProvider(String golrServer,
owltools.graph.OWLGraphWrapper graph,
org.semanticweb.owlapi.reasoner.OWLReasoner reasoner,
Set<org.semanticweb.owlapi.model.OWLClass> locationRoots,
Set<String> evidenceRestriction,
Set<String> taxonRestriction,
Set<String> blackList) |
Modifier and Type | Method and Description |
---|---|
Map<Bioentity,List<GeneAnnotation>> |
getFunctions(Set<Bioentity> entities) |
Map<Bioentity,List<GeneAnnotation>> |
getGeneProducts(String bp) |
Map<Bioentity,List<GeneAnnotation>> |
getLocations(Set<Bioentity> entities) |
protected void |
logRequest(URI uri) |
public GolrSeedingDataProvider(String golrServer, owltools.graph.OWLGraphWrapper graph, org.semanticweb.owlapi.reasoner.OWLReasoner reasoner, Set<org.semanticweb.owlapi.model.OWLClass> locationRoots, Set<String> evidenceRestriction, Set<String> taxonRestriction, Set<String> blackList)
protected void logRequest(URI uri)
public Map<Bioentity,List<GeneAnnotation>> getGeneProducts(String bp) throws IOException
getGeneProducts
in interface SeedingDataProvider
IOException
public Map<Bioentity,List<GeneAnnotation>> getFunctions(Set<Bioentity> entities) throws IOException
getFunctions
in interface SeedingDataProvider
IOException
public Map<Bioentity,List<GeneAnnotation>> getLocations(Set<Bioentity> entities) throws IOException
getLocations
in interface SeedingDataProvider
IOException
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