Package owltools.gaf.inference

Perform inference on Gene Associations

See:
          Description

Interface Summary
AnnotationPredictor given a bioentity, predict a set of annotations
 

Class Summary
AbstractAnnotationPredictor  
BasicAnnotationPropagator TODO: this class has not yet been tested! This performs basic annotation inferences involving propagation between the 3 sub-ontologies in GO MF -> MP over part_of BP -> CC over occurs_in TODO: reimplement using OWL semantics and reasoning
CompositionalClassPredictor Given an annotation to classes c1, c2, ..., cn, we generate suggestions of annotations to class D if D EquivalentTo d1 and d2 and dm and forall d in d1..dm, there exists a class c in c1...cn such that: Path(c,d) OR d = r some e, and Path(c,e) (i.e.
Prediction  
TaxonConstraintsEngine  
 

Package owltools.gaf.inference Description

Perform inference on Gene Associations



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