owltools.gaf.rules.go
Class GoAnnotationTaxonRule
java.lang.Object
owltools.gaf.rules.AbstractAnnotationRule
owltools.gaf.rules.AnnotationTaxonRule
owltools.gaf.rules.go.GoAnnotationTaxonRule
- All Implemented Interfaces:
- AnnotationRule
public class GoAnnotationTaxonRule
- extends AnnotationTaxonRule
Checks if an annotation is valid according to GO taxon constraints.
Ensure that taxGraphWrapper contains:
http://www.geneontology.org/ontology/obo_format_1_2/gene_ontology_ext.obo
http://www.geneontology.org/quality_control/annotation_checks/taxon_checks/taxon_go_triggers.obo
http://www.geneontology.org/quality_control/annotation_checks/taxon_checks/ncbi_taxon_slim.obo
http://www.geneontology.org/quality_control/annotation_checks/taxon_checks/taxon_union_terms.obo
See also:
http://www.biomedcentral.com/1471-2105/11/530
- Author:
- cjm
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
GoAnnotationTaxonRule
public GoAnnotationTaxonRule(OWLGraphWrapper graphWrapper)
- Parameters:
graphWrapper
-
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