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Packages that use AnnotationPredictor | |
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owltools.gaf.inference | Perform inference on Gene Associations |
Uses of AnnotationPredictor in owltools.gaf.inference |
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Classes in owltools.gaf.inference that implement AnnotationPredictor | |
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class |
AbstractAnnotationPredictor
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class |
BasicAnnotationPropagator
TODO: this class has not yet been tested! This performs basic annotation inferences involving propagation between the 3 sub-ontologies in GO MF -> MP over part_of BP -> CC over occurs_in TODO: reimplement using OWL semantics and reasoning |
class |
CompositionalClassPredictor
Given an annotation to classes c1, c2, ..., cn, we generate suggestions of annotations to class D if D EquivalentTo d1 and d2 and dm and forall d in d1..dm, there exists a class c in c1...cn such that: Path(c,d) OR d = r some e, and Path(c,e) (i.e. |
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