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java.lang.Objectowltools.gaf.rules.AnnotationRuleViolation
public class AnnotationRuleViolation
Data associated with a rule violation
Constructor Summary | |
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AnnotationRuleViolation(String ruleId,
String msg)
Create a simple violation from with a given message. |
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AnnotationRuleViolation(String ruleId,
String message,
GeneAnnotation sourceAnnotation)
Create a violation object with a message and a the corresponding source annotation. |
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AnnotationRuleViolation(String ruleId,
String message,
String annotationRow)
Create a violation object with a message and a the corresponding annotation row. |
Method Summary | |
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String |
getAnnotationRow()
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String |
getGafDocument()
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int |
getLineNumber()
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String |
getMessage()
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String |
getRuleId()
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GeneAnnotation |
getSourceAnnotation()
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Set<GeneAnnotation> |
getSuggestedReplacements()
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void |
setAnnotationRow(String annotationRow)
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void |
setGafDoument(String gafDoument)
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void |
setLineNumber(int lineNumber)
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void |
setSourceAnnotation(GeneAnnotation sourceAnnotation)
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void |
setSuggestedReplacements(Set<GeneAnnotation> suggestedReplacements)
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String |
toString()
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Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Constructor Detail |
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public AnnotationRuleViolation(String ruleId, String msg)
ruleId
- msg
- public AnnotationRuleViolation(String ruleId, String message, GeneAnnotation sourceAnnotation)
ruleId
- message
- sourceAnnotation
- public AnnotationRuleViolation(String ruleId, String message, String annotationRow)
ruleId
- message
- annotationRow
- Method Detail |
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public String getRuleId()
public String getMessage()
public Set<GeneAnnotation> getSuggestedReplacements()
public void setSuggestedReplacements(Set<GeneAnnotation> suggestedReplacements)
public GeneAnnotation getSourceAnnotation()
public void setSourceAnnotation(GeneAnnotation sourceAnnotation)
public String getAnnotationRow()
public void setAnnotationRow(String annotationRow)
public int getLineNumber()
public void setLineNumber(int lineNumber)
public String getGafDocument()
public void setGafDoument(String gafDoument)
public String toString()
toString
in class Object
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