Package owltools.gaf

Processing of GO Gene Association Files

See:
          Description

Interface Summary
GafParserListener  
 

Class Summary
AnnotationSource  
Bioentity  
CompositeQualifier  
ExtensionExpression Corresponds to col16 in GAF2.0
GafDocument  
GafObjectsBuilder The class builds GafDocument a gaf file.
GAFParser  
GeneAnnotation  
IdMapping  
WithInfo  
 

Package owltools.gaf Description

Processing of GO Gene Association Files

This package contains gaf file parser GAFParser, and also contains GafObjectsBuilder to build Document Object Model from a gaf file. See gaf.GAFParserTest and gaf.GafObjectsBuilderTest classes to see examples how to use GafParser and GafObjectsBuilder classes.



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