Uses of Interface
owltools.gaf.rules.AnnotationRule

Packages that use AnnotationRule
owltools.gaf.rules   
owltools.gaf.rules.go   
 

Uses of AnnotationRule in owltools.gaf.rules
 

Classes in owltools.gaf.rules that implement AnnotationRule
 class AbstractAnnotationRule
           
 class AnnotationRegularExpressionFromXMLRule
          This class implements execution of the regular expression rules.
 class AnnotationTaxonRule
          Checks if an annotation is valid according to taxon constraints.
 class GenericReasonerValidationCheck
           
 

Methods in owltools.gaf.rules that return AnnotationRule
protected  AnnotationRule AnnotationRulesFactoryImpl.getClassForName(String className)
           
 

Methods in owltools.gaf.rules that return types with arguments of type AnnotationRule
 List<AnnotationRule> AnnotationRulesFactoryImpl.getGafRules()
           
 List<AnnotationRule> AnnotationRulesFactory.getGafRules()
          Get the list of rules, which require a global view of the GAF (GafDocument).
 List<AnnotationRule> AnnotationRulesFactoryImpl.getGeneAnnotationRules()
           
 List<AnnotationRule> AnnotationRulesFactory.getGeneAnnotationRules()
          Get the list of rules to be applied for each GeneAnnotation
 

Uses of AnnotationRule in owltools.gaf.rules.go
 

Classes in owltools.gaf.rules.go that implement AnnotationRule
 class BasicChecksRule
          This class performs basic checks.
 class GoAnnotationTaxonRule
          Checks if an annotation is valid according to GO taxon constraints.
 class GoClassReferenceAnnotationRule
          Checks to see if an annotation uses a class that is not in the current ontology, and that the class has not been obsoleted
 

Methods in owltools.gaf.rules.go that return AnnotationRule
protected  AnnotationRule GoAnnotationRulesFactoryImpl.getClassForName(String className)
           
 



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