Uses of Class
owltools.gaf.rules.AnnotationRuleViolation

Packages that use AnnotationRuleViolation
owltools.gaf.rules   
owltools.gaf.rules.go   
 

Uses of AnnotationRuleViolation in owltools.gaf.rules
 

Methods in owltools.gaf.rules that return types with arguments of type AnnotationRuleViolation
 Set<AnnotationRuleViolation> GenericReasonerValidationCheck.getRuleViolations(GafDocument gafDoc)
           
 Set<AnnotationRuleViolation> AnnotationRule.getRuleViolations(GafDocument gafDoc)
          Given a whole GafDocument , find the set of violations using the rule
 Set<AnnotationRuleViolation> AbstractAnnotationRule.getRuleViolations(GafDocument gafDoc)
           
 Set<AnnotationRuleViolation> GenericReasonerValidationCheck.getRuleViolations(GeneAnnotation a)
           
 Set<AnnotationRuleViolation> AnnotationTaxonRule.getRuleViolations(GeneAnnotation a)
           
 Set<AnnotationRuleViolation> AnnotationRule.getRuleViolations(GeneAnnotation a)
          Given an annotation, find the set of violations using the rule
 Set<AnnotationRuleViolation> AnnotationRegularExpressionFromXMLRule.getRuleViolations(GeneAnnotation a)
           
abstract  Set<AnnotationRuleViolation> AbstractAnnotationRule.getRuleViolations(GeneAnnotation a)
           
 Set<AnnotationRuleViolation> AnnotationTaxonRule.getRuleViolations(String annotationCls, String taxonCls)
           
 Map<String,List<AnnotationRuleViolation>> AnnotationRulesEngine.validateAnnotations(GafDocument doc)
           
 

Uses of AnnotationRuleViolation in owltools.gaf.rules.go
 

Methods in owltools.gaf.rules.go that return types with arguments of type AnnotationRuleViolation
 Set<AnnotationRuleViolation> GoClassReferenceAnnotationRule.getRuleViolations(GeneAnnotation a)
           
 Set<AnnotationRuleViolation> BasicChecksRule.getRuleViolations(GeneAnnotation a)
           
 



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