Package owltools.gaf.inference

Perform inference on Gene Associations

See:
          Description

Interface Summary
AnnotationPredictor given a bioentity, predict a set of annotations
 

Class Summary
AbstractAnnotationPredictor  
BasicAnnotationPropagator TODO: this class has not yet been tested! This performs basic annotation inferences involving propagation between the 3 sub-ontologies in GO MF -> MP over part_of BP -> CC over occurs_in TODO: reimplement using OWL semantics and reasoning
ClassTaxonMatrix Matrix representing the applicability of classes and taxa.
CompositionalClassPredictor Given an annotation to classes c1, c2, ..., cn, we generate suggestions of annotations to class D if D EquivalentTo d1 and d2 and dm and forall d in d1..dm, there exists a class c in c1...cn such that: Path(c,d) OR d = r some e, and Path(c,e) (i.e.
Prediction  
TaxonConstraintsEngine  
 

Package owltools.gaf.inference Description

Perform inference on Gene Associations



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