owltools.gaf.rules.go
Class GoAnnotationRulesFactoryImpl

java.lang.Object
  extended by owltools.gaf.rules.AnnotationRulesFactoryImpl
      extended by owltools.gaf.rules.go.GoAnnotationRulesFactoryImpl
All Implemented Interfaces:
AnnotationRulesFactory

public class GoAnnotationRulesFactoryImpl
extends AnnotationRulesFactoryImpl


Constructor Summary
GoAnnotationRulesFactoryImpl()
           
GoAnnotationRulesFactoryImpl(OWLGraphWrapper graph, OWLGraphWrapper eco)
           
GoAnnotationRulesFactoryImpl(String qcfile, String xrfabbslocation, List<String> ontologies, String eco)
           
GoAnnotationRulesFactoryImpl(String qcfile, String xrfabbslocation, OWLGraphWrapper graph, OWLGraphWrapper eco)
           
 
Method Summary
protected  AnnotationRule getClassForName(String className)
           
 
Methods inherited from class owltools.gaf.rules.AnnotationRulesFactoryImpl
getGafRules, getGeneAnnotationRules, init
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

GoAnnotationRulesFactoryImpl

public GoAnnotationRulesFactoryImpl()

GoAnnotationRulesFactoryImpl

public GoAnnotationRulesFactoryImpl(OWLGraphWrapper graph,
                                    OWLGraphWrapper eco)

GoAnnotationRulesFactoryImpl

public GoAnnotationRulesFactoryImpl(String qcfile,
                                    String xrfabbslocation,
                                    List<String> ontologies,
                                    String eco)

GoAnnotationRulesFactoryImpl

public GoAnnotationRulesFactoryImpl(String qcfile,
                                    String xrfabbslocation,
                                    OWLGraphWrapper graph,
                                    OWLGraphWrapper eco)
Method Detail

getClassForName

protected AnnotationRule getClassForName(String className)
                                  throws Exception
Overrides:
getClassForName in class AnnotationRulesFactoryImpl
Returns:
annotation rule (never null)
Throws:
Exception


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