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java.lang.Objectowltools.gaf.rules.AbstractAnnotationRule
public abstract class AbstractAnnotationRule
Constructor Summary | |
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AbstractAnnotationRule()
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Method Summary | |
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String |
getRuleId()
Get the ruleId. |
Set<AnnotationRuleViolation> |
getRuleViolations(GafDocument gafDoc)
Given a whole GafDocument , find the set of violations using the rule |
abstract Set<AnnotationRuleViolation> |
getRuleViolations(GeneAnnotation a)
Given an annotation, find the set of violations using the rule |
Set<AnnotationRuleViolation> |
getRuleViolations(OWLGraphWrapper graph)
Given a whole GafDocument in OWL, find the set of violations using the rule |
boolean |
isAnnotationLevel()
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boolean |
isDocumentLevel()
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boolean |
isOwlDocumentLevel()
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void |
setRuleId(String ruleId)
Set the rule id |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public AbstractAnnotationRule()
Method Detail |
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public abstract Set<AnnotationRuleViolation> getRuleViolations(GeneAnnotation a)
AnnotationRule
getRuleViolations
in interface AnnotationRule
a
- annotation
AnnotationRule.isAnnotationLevel()
public Set<AnnotationRuleViolation> getRuleViolations(GafDocument gafDoc)
AnnotationRule
GafDocument
, find the set of violations using the rule
getRuleViolations
in interface AnnotationRule
AnnotationRule.isDocumentLevel()
public Set<AnnotationRuleViolation> getRuleViolations(OWLGraphWrapper graph)
AnnotationRule
GafDocument
in OWL, find the set of violations using the rule
getRuleViolations
in interface AnnotationRule
AnnotationRule.isOwlDocumentLevel()
public void setRuleId(String ruleId)
AnnotationRule
setRuleId
in interface AnnotationRule
public String getRuleId()
AnnotationRule
getRuleId
in interface AnnotationRule
public boolean isAnnotationLevel()
isAnnotationLevel
in interface AnnotationRule
GeneAnnotation
.AnnotationRule.getRuleViolations(GeneAnnotation)
public boolean isDocumentLevel()
isDocumentLevel
in interface AnnotationRule
AnnotationRule.getRuleViolations(GafDocument)
public boolean isOwlDocumentLevel()
isOwlDocumentLevel
in interface AnnotationRule
AnnotationRule.getRuleViolations(OWLGraphWrapper)
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