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public interface AnnotationRule
Method Summary | |
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String |
getRuleId()
Get the ruleId. |
Set<AnnotationRuleViolation> |
getRuleViolations(GafDocument gafDoc)
Given a whole GafDocument , find the set of violations using the rule |
Set<AnnotationRuleViolation> |
getRuleViolations(GeneAnnotation a)
Given an annotation, find the set of violations using the rule |
Set<AnnotationRuleViolation> |
getRuleViolations(OWLGraphWrapper graph)
Given a whole GafDocument in OWL, find the set of violations using the rule |
boolean |
isAnnotationLevel()
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boolean |
isDocumentLevel()
|
boolean |
isOwlDocumentLevel()
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void |
setRuleId(String ruleId)
Set the rule id |
Method Detail |
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Set<AnnotationRuleViolation> getRuleViolations(GeneAnnotation a)
a
- annotation
isAnnotationLevel()
Set<AnnotationRuleViolation> getRuleViolations(GafDocument gafDoc)
GafDocument
, find the set of violations using the rule
gafDoc
-
isDocumentLevel()
Set<AnnotationRuleViolation> getRuleViolations(OWLGraphWrapper graph)
GafDocument
in OWL, find the set of violations using the rule
graph
-
isOwlDocumentLevel()
void setRuleId(String ruleId)
ruleId
- String getRuleId()
boolean isAnnotationLevel()
GeneAnnotation
.getRuleViolations(GeneAnnotation)
boolean isDocumentLevel()
getRuleViolations(GafDocument)
boolean isOwlDocumentLevel()
getRuleViolations(OWLGraphWrapper)
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