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java.lang.Objectowltools.gaf.rules.AbstractAnnotationRule
public abstract class AbstractAnnotationRule
Constructor Summary | |
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AbstractAnnotationRule()
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Method Summary | |
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Date |
getDate()
Get the status date of this rule. |
String |
getDescription()
Get the description for a rule. |
String |
getName()
Return the name of the rule. |
String |
getRuleId()
Get the ruleId. |
Set<AnnotationRuleViolation> |
getRuleViolations(GafDocument gafDoc)
Given a whole GafDocument , find the set of violations using the rule |
abstract Set<AnnotationRuleViolation> |
getRuleViolations(GeneAnnotation a)
Given an annotation, find the set of violations using the rule |
Set<AnnotationRuleViolation> |
getRuleViolations(OWLGraphWrapper graph)
Given a whole GafDocument in OWL, find the set of violations using the rule |
String |
getStatus()
Get the status of this rule. |
boolean |
isAnnotationLevel()
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boolean |
isDocumentLevel()
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boolean |
isOwlDocumentLevel()
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void |
setDate(Date date)
Set the status date for this rule. |
void |
setDescription(String description)
Set the description for this rule. |
void |
setName(String name)
Set the name for the rule. |
void |
setRuleId(String ruleId)
Set the rule id |
void |
setStatus(String status)
Set the status for this rule. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public AbstractAnnotationRule()
Method Detail |
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public abstract Set<AnnotationRuleViolation> getRuleViolations(GeneAnnotation a)
AnnotationRule
getRuleViolations
in interface AnnotationRule
a
- annotation
AnnotationRule.isAnnotationLevel()
public Set<AnnotationRuleViolation> getRuleViolations(GafDocument gafDoc)
AnnotationRule
GafDocument
, find the set of violations using the rule
getRuleViolations
in interface AnnotationRule
AnnotationRule.isDocumentLevel()
public Set<AnnotationRuleViolation> getRuleViolations(OWLGraphWrapper graph)
AnnotationRule
GafDocument
in OWL, find the set of violations using the rule
getRuleViolations
in interface AnnotationRule
AnnotationRule.isOwlDocumentLevel()
public void setRuleId(String ruleId)
AnnotationRule
setRuleId
in interface AnnotationRule
public String getRuleId()
AnnotationRule
getRuleId
in interface AnnotationRule
public String getName()
AnnotationRule
getName
in interface AnnotationRule
public void setName(String name)
AnnotationRule
setName
in interface AnnotationRule
public Date getDate()
AnnotationRule
getDate
in interface AnnotationRule
public void setDate(Date date)
AnnotationRule
setDate
in interface AnnotationRule
public String getStatus()
AnnotationRule
getStatus
in interface AnnotationRule
public void setStatus(String status)
AnnotationRule
setStatus
in interface AnnotationRule
public String getDescription()
AnnotationRule
getDescription
in interface AnnotationRule
public void setDescription(String description)
AnnotationRule
setDescription
in interface AnnotationRule
public boolean isAnnotationLevel()
isAnnotationLevel
in interface AnnotationRule
GeneAnnotation
.AnnotationRule.getRuleViolations(GeneAnnotation)
public boolean isDocumentLevel()
isDocumentLevel
in interface AnnotationRule
AnnotationRule.getRuleViolations(GafDocument)
public boolean isOwlDocumentLevel()
isOwlDocumentLevel
in interface AnnotationRule
AnnotationRule.getRuleViolations(OWLGraphWrapper)
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