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Packages that use AnnotationRule | |
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owltools.gaf.rules | |
owltools.gaf.rules.go |
Uses of AnnotationRule in owltools.gaf.rules |
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Classes in owltools.gaf.rules that implement AnnotationRule | |
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class |
AbstractAnnotationRule
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class |
AnnotationRegularExpressionFromXMLRule
This class implements execution of the regular expression rules. |
class |
AnnotationTaxonRule
Checks if an annotation is valid according to taxon constraints. |
class |
GenericReasonerValidationCheck
This check using the ElkReasoner will not detect unsatisfiable
classes, which result from inverse_of object properties. |
Methods in owltools.gaf.rules that return AnnotationRule | |
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protected AnnotationRule |
AnnotationRulesFactoryImpl.getClassForName(String className)
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AnnotationRule |
AnnotationRulesEngine.getRule(String id)
Retrieve the corresponding rule for a given rule id. |
Methods in owltools.gaf.rules that return types with arguments of type AnnotationRule | |
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List<AnnotationRule> |
AnnotationRulesFactoryImpl.getGafDocumentRules()
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List<AnnotationRule> |
AnnotationRulesFactory.getGafDocumentRules()
Get the list of rules, which require a global view of the GAF ( GafDocument ). |
List<AnnotationRule> |
AnnotationRulesFactoryImpl.getGeneAnnotationRules()
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List<AnnotationRule> |
AnnotationRulesFactory.getGeneAnnotationRules()
Get the list of rules to be applied for each GeneAnnotation |
List<AnnotationRule> |
AnnotationRulesFactoryImpl.getOwlRules()
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List<AnnotationRule> |
AnnotationRulesFactory.getOwlRules()
Get the list of rules, which require a global view of the GAF ( GafDocument ) and OWL. |
Uses of AnnotationRule in owltools.gaf.rules.go |
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Classes in owltools.gaf.rules.go that implement AnnotationRule | |
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class |
BasicChecksRule
This class performs basic checks. |
class |
GoAnnotationTaxonRule
Checks if an annotation is valid according to GO taxon constraints. |
class |
GoBindingCheckWithFieldRule
GO_AR:0000003 |
class |
GoClassReferenceAnnotationRule
Checks to see if an annotation uses a class that is not in the current ontology, and that the class has not been obsoleted |
class |
GoICAnnotationRule
GO_AR:0000016 |
class |
GoIDAAnnotationRule
GO_AR:0000017 |
class |
GoIEPRestrictionsRule
GO_AR:0000006 |
class |
GoIPIAnnotationRule
GO_AR:0000018 |
class |
GoIPICatalyticActivityRestrictionsRule
GO_AR:0000007 |
class |
GoNDAnnotationRule
GO_AR:0000011 |
class |
GoNoISSProteinBindingRule
GO_AR:0000005 |
Methods in owltools.gaf.rules.go that return AnnotationRule | |
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protected AnnotationRule |
GoAnnotationRulesFactoryImpl.getClassForName(String className)
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