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XMLStreamWriter
.AnnotationRulesEngine
.AnnotationRule
objects from the qc file.AnnotationRuleViolation.ViolationType
.
GafDocument
a gaf file.ElkReasoner
will not detect unsatisfiable
classes, which result from inverse_of object properties.GafDocument
).
GeneAnnotation
GafObjectsBuilder.getNextSplitDocument()
method stops calling next method of the GafParser
and returns the GafDocument
object build with the number of rows
GafDocument
) and OWL.
GafDocument
, find the set of violations using the rule
GafDocument
in OWL, find the set of violations using the rule
AnnotationRuleViolation.ViolationType
.
GafDocument
.
ClassTaxonMatrix
using the default delimiter.
ClassTaxonMatrix
using the specified delimiter.
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