AbstractAnnotationPredictor
AbstractAnnotationRule
AbstractXmlWriter
AnnotationPredictor
AnnotationRegularExpressionFromXMLRule
AnnotationRule
AnnotationRulesEngine
AnnotationRulesEngine.AnnotationRuleCheckException
AnnotationRulesEngine.AnnotationRulesEngineResult
AnnotationRulesFactory
AnnotationRulesFactoryImpl
AnnotationRuleViolation
AnnotationRuleViolation.ViolationType
AnnotationSource
AnnotationTaxonRule
BasicAnnotationPropagator
BasicChecksRule
Bioentity
ClassTaxonMatrix
CompositeQualifier
CompositionalClassPredictor
EcoTools
ExtensionExpression
GafDocument
GafObjectsBuilder
GAFOWLBridge
GAFOWLBridge.BioentityMapping
GAFOWLBridge.Vocab
GAFParser
GafParserListener
GeneAnnotation
GenericReasonerValidationCheck
GoAnnotationRulesFactoryImpl
GoAnnotationTaxonRule
GoBindingCheckWithFieldRule
GoClassReferenceAnnotationRule
GoICAnnotationRule
GoIDAAnnotationRule
GoIEPRestrictionsRule
GoIPIAnnotationRule
GoIPICatalyticActivityRestrictionsRule
GoMultipleTaxonRule
GoNDAnnotationRule
GoNoISSProteinBindingRule
GOReciprocalAnnotationRule
IdMapping
Prediction
PseudoRdfXmlWriter
TaxonConstraintsEngine
WithInfo
XgmmlWriter
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