|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Objectowltools.gaf.rules.AnnotationRulesFactoryImpl
public class AnnotationRulesFactoryImpl
This class reads the annotation_qc.xml file and builds AnnotationRule
objects from the qc file.
Field Summary | |
---|---|
static ThreadLocal<DateFormat> |
status_df
|
Constructor Summary | |
---|---|
protected |
AnnotationRulesFactoryImpl(String path,
OWLGraphWrapper graph)
|
Method Summary | |
---|---|
protected AnnotationRule |
getClassForName(String className)
|
List<AnnotationRule> |
getGafDocumentRules()
Get the list of rules, which require a global view of the GAF ( GafDocument ). |
List<AnnotationRule> |
getGeneAnnotationRules()
Get the list of rules to be applied for each GeneAnnotation |
OWLGraphWrapper |
getGraph()
Get the underlying ontology graph for this rule factory. |
List<AnnotationRule> |
getOwlRules()
Get the list of rules, which require a global view of the GAF ( GafDocument ) and OWL. |
void |
init()
Initialize the factory. |
Methods inherited from class java.lang.Object |
---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
---|
public static final ThreadLocal<DateFormat> status_df
Constructor Detail |
---|
protected AnnotationRulesFactoryImpl(String path, OWLGraphWrapper graph)
path
- location of the annotation_qc.xml filegraph
- Method Detail |
---|
public void init()
AnnotationRulesFactory
init
in interface AnnotationRulesFactory
protected AnnotationRule getClassForName(String className) throws Exception
className
-
Exception
public List<AnnotationRule> getGeneAnnotationRules()
AnnotationRulesFactory
GeneAnnotation
getGeneAnnotationRules
in interface AnnotationRulesFactory
public List<AnnotationRule> getGafDocumentRules()
AnnotationRulesFactory
GafDocument
).
getGafDocumentRules
in interface AnnotationRulesFactory
public List<AnnotationRule> getOwlRules()
AnnotationRulesFactory
GafDocument
) and OWL.
getOwlRules
in interface AnnotationRulesFactory
public OWLGraphWrapper getGraph()
AnnotationRulesFactory
getGraph
in interface AnnotationRulesFactory
|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |