Uses of Class
owltools.gaf.rules.AnnotationRuleViolation.ViolationType

Packages that use AnnotationRuleViolation.ViolationType
owltools.gaf.rules   
owltools.gaf.rules.go   
 

Uses of AnnotationRuleViolation.ViolationType in owltools.gaf.rules
 

Methods in owltools.gaf.rules that return AnnotationRuleViolation.ViolationType
 AnnotationRuleViolation.ViolationType AnnotationRuleViolation.getType()
           
static AnnotationRuleViolation.ViolationType AnnotationRuleViolation.ViolationType.valueOf(String name)
          Returns the enum constant of this type with the specified name.
static AnnotationRuleViolation.ViolationType[] AnnotationRuleViolation.ViolationType.values()
          Returns an array containing the constants of this enum type, in the order they are declared.
 

Methods in owltools.gaf.rules that return types with arguments of type AnnotationRuleViolation.ViolationType
 List<AnnotationRuleViolation.ViolationType> AnnotationRulesEngine.AnnotationRulesEngineResult.getTypes()
           
 

Methods in owltools.gaf.rules with parameters of type AnnotationRuleViolation.ViolationType
 int AnnotationRulesEngine.AnnotationRulesEngineResult.countViolations(AnnotationRuleViolation.ViolationType type)
           
 Map<String,List<AnnotationRuleViolation>> AnnotationRulesEngine.AnnotationRulesEngineResult.getViolations(AnnotationRuleViolation.ViolationType type)
          Retrieve all violations for a given AnnotationRuleViolation.ViolationType.
 boolean AnnotationRulesEngine.AnnotationRulesEngineResult.hasType(AnnotationRuleViolation.ViolationType type)
           
 void AnnotationRuleViolation.setType(AnnotationRuleViolation.ViolationType type)
           
 

Constructors in owltools.gaf.rules with parameters of type AnnotationRuleViolation.ViolationType
AnnotationRuleViolation(String ruleId, String message, GeneAnnotation sourceAnnotation, AnnotationRuleViolation.ViolationType type)
          Create a violation object with a message and a the corresponding source annotation.
AnnotationRuleViolation(String ruleId, String message, String annotationRow, AnnotationRuleViolation.ViolationType type)
          Create a violation object with a message and a the corresponding annotation row and AnnotationRuleViolation.ViolationType.
 

Uses of AnnotationRuleViolation.ViolationType in owltools.gaf.rules.go
 

Constructors in owltools.gaf.rules.go with parameters of type AnnotationRuleViolation.ViolationType
GoNoISSProteinBindingRule(OWLGraphWrapper eco, AnnotationRuleViolation.ViolationType violationType)
           
 



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