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XMLStreamWriter
.AnnotationRulesEngine
.AnnotationRule
objects from the qc file.AnnotationRuleViolation.ViolationType
.
EcoMapper
.
EcoMapper
.
EcoMapper
.
EcoMapper
.
TraversingEcoMapper
instance using a new
ParserWrapper
to load ECO.
TraversingEcoMapper
instance using the given
ParserWrapper
to load ECO.
TraversingEcoMapper
instance using the given
ParserWrapper
to load ECO from the given location.
TraversingEcoMapper
instance using the given
OWLGraphWrapper
.
EcoMapper
and TraversingEcoMapper
.EcoMapper
, TraversingEcoMapper
and EcoMapperFactory
.ParserWrapper
to load the ECO.
GafDocument
a gaf file.ElkReasoner
will not detect unsatisfiable
classes, which result from inverse_of object properties.GafDocument
).
GeneAnnotation
GafObjectsBuilder.getNextSplitDocument()
method stops calling next method of the GafParser
and returns the GafDocument
object build with the number of rows
GafDocument
) and OWL.
GafDocument
, find the set of violations using the rule
GafDocument
in OWL, find the set of violations using the rule
AnnotationRuleViolation.ViolationType
.
GafDocument
.
ClassTaxonMatrix
using the default delimiter.
ClassTaxonMatrix
using the specified delimiter.
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