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Packages that use AnnotationRuleViolation.ViolationType | |
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owltools.gaf.rules | |
owltools.gaf.rules.go |
Uses of AnnotationRuleViolation.ViolationType in owltools.gaf.rules |
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Methods in owltools.gaf.rules that return AnnotationRuleViolation.ViolationType | |
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AnnotationRuleViolation.ViolationType |
AnnotationRuleViolation.getType()
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static AnnotationRuleViolation.ViolationType |
AnnotationRuleViolation.ViolationType.valueOf(String name)
Returns the enum constant of this type with the specified name. |
static AnnotationRuleViolation.ViolationType[] |
AnnotationRuleViolation.ViolationType.values()
Returns an array containing the constants of this enum type, in the order they are declared. |
Methods in owltools.gaf.rules that return types with arguments of type AnnotationRuleViolation.ViolationType | |
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List<AnnotationRuleViolation.ViolationType> |
AnnotationRulesEngine.AnnotationRulesEngineResult.getTypes()
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Methods in owltools.gaf.rules with parameters of type AnnotationRuleViolation.ViolationType | |
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int |
AnnotationRulesEngine.AnnotationRulesEngineResult.countViolations(AnnotationRuleViolation.ViolationType type)
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Map<String,List<AnnotationRuleViolation>> |
AnnotationRulesEngine.AnnotationRulesEngineResult.getViolations(AnnotationRuleViolation.ViolationType type)
Retrieve all violations for a given AnnotationRuleViolation.ViolationType . |
boolean |
AnnotationRulesEngine.AnnotationRulesEngineResult.hasType(AnnotationRuleViolation.ViolationType type)
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void |
AnnotationRuleViolation.setType(AnnotationRuleViolation.ViolationType type)
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Constructors in owltools.gaf.rules with parameters of type AnnotationRuleViolation.ViolationType | |
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AnnotationRuleViolation(String ruleId,
String message,
GeneAnnotation sourceAnnotation,
AnnotationRuleViolation.ViolationType type)
Create a violation object with a message and a the corresponding source annotation. |
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AnnotationRuleViolation(String ruleId,
String message,
String annotationRow,
AnnotationRuleViolation.ViolationType type)
Create a violation object with a message and a the corresponding annotation row and AnnotationRuleViolation.ViolationType . |
Uses of AnnotationRuleViolation.ViolationType in owltools.gaf.rules.go |
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Constructors in owltools.gaf.rules.go with parameters of type AnnotationRuleViolation.ViolationType | |
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GoNoISSProteinBindingRule(TraversingEcoMapper eco,
AnnotationRuleViolation.ViolationType violationType)
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