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java.lang.Objectowltools.gaf.rules.AbstractAnnotationRule
owltools.gaf.rules.go.GoIDAAnnotationRule
public class GoIDAAnnotationRule
GO_AR:0000017
Field Summary | |
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static String |
PERMANENT_JAVA_ID
The string to identify this class in the annotation_qc.xml and related factories. |
Constructor Summary | |
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GoIDAAnnotationRule(TraversingEcoMapper eco)
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Method Summary | |
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Set<AnnotationRuleViolation> |
getRuleViolations(GeneAnnotation a)
Given an annotation, find the set of violations using the rule |
Methods inherited from class owltools.gaf.rules.AbstractAnnotationRule |
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getDate, getDescription, getGrandFatheringDate, getName, getRuleId, getRuleViolations, getRuleViolations, getStatus, hasGrandFathering, isAnnotationLevel, isDocumentLevel, isOwlDocumentLevel, setDate, setDescription, setGrandFatheringDate, setName, setRuleId, setStatus |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public static final String PERMANENT_JAVA_ID
Constructor Detail |
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public GoIDAAnnotationRule(TraversingEcoMapper eco)
Method Detail |
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public Set<AnnotationRuleViolation> getRuleViolations(GeneAnnotation a)
AnnotationRule
getRuleViolations
in interface AnnotationRule
getRuleViolations
in class AbstractAnnotationRule
a
- annotation
AnnotationRule.isAnnotationLevel()
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