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Hierarchy For All Packages
Package Hierarchies:
owltools.gaf
,
owltools.gaf.eco
,
owltools.gaf.inference
,
owltools.gaf.io
,
owltools.gaf.owl
,
owltools.gaf.owl.mapping
,
owltools.gaf.rules
,
owltools.gaf.rules.go
Class Hierarchy
java.lang.
Object
owltools.gaf.inference.
AbstractAnnotationPredictor
(implements owltools.gaf.inference.
AnnotationPredictor
)
owltools.gaf.inference.
BasicAnnotationPropagator
(implements owltools.gaf.inference.
AnnotationPredictor
)
owltools.gaf.inference.
CompositionalClassPredictor
(implements owltools.gaf.inference.
AnnotationPredictor
)
owltools.gaf.inference.
FoldBasedPredictor
(implements owltools.gaf.inference.
AnnotationPredictor
)
owltools.gaf.rules.
AbstractAnnotationRule
(implements owltools.gaf.rules.
AnnotationRule
)
owltools.gaf.rules.
AnnotationRegularExpressionFromXMLRule
owltools.gaf.rules.
AnnotationTaxonRule
owltools.gaf.rules.go.
GoAnnotationTaxonRule
owltools.gaf.rules.go.
BasicChecksRule
owltools.gaf.rules.
GenericReasonerValidationCheck
owltools.gaf.rules.go.
GoAnnotationPredictionRule
owltools.gaf.rules.go.
GoBindingCheckWithFieldRule
owltools.gaf.rules.go.
GoClassReferenceAnnotationRule
owltools.gaf.rules.go.
GoICAnnotationRule
owltools.gaf.rules.go.
GoIDAAnnotationRule
owltools.gaf.rules.go.
GoIEPRestrictionsRule
owltools.gaf.rules.go.
GoIPIAnnotationRule
owltools.gaf.rules.go.
GoIPICatalyticActivityRestrictionsRule
owltools.gaf.rules.go.
GoMultipleTaxonRule
owltools.gaf.rules.go.
GoNDAnnotationRule
owltools.gaf.rules.go.
GoNoHighLevelTermAnnotationRule
owltools.gaf.rules.go.
GoNoISSProteinBindingRule
owltools.gaf.rules.go.
GOReciprocalAnnotationRule
owltools.gaf.io.
AbstractGafWriter
owltools.gaf.io.
GafWriter
owltools.gaf.io.
GafWriter.BufferedGafWriter
owltools.gaf.io.
AbstractXmlWriter
owltools.gaf.io.
PseudoRdfXmlWriter
owltools.gaf.io.
XgmmlWriter
owltools.gaf.rules.
AnnotationRulesEngine
owltools.gaf.rules.
AnnotationRulesEngine.AnnotationRulesEngineResult
owltools.gaf.rules.
AnnotationRulesFactoryImpl
(implements owltools.gaf.rules.
AnnotationRulesFactory
)
owltools.gaf.rules.go.
GoAnnotationRulesFactoryImpl
owltools.gaf.rules.
AnnotationRuleViolation
owltools.gaf.
AnnotationSource
owltools.gaf.
Bioentity
owltools.gaf.inference.
ClassTaxonMatrix
owltools.gaf.
CompositeQualifier
owltools.gaf.eco.
EcoMapperFactory
owltools.gaf.eco.
EcoMapperFactory.OntologyMapperPair
<MAPPER>
owltools.gaf.eco.
EcoMapperImpl
(implements owltools.gaf.eco.
EcoMapper
)
owltools.gaf.eco.
TraversingEcoMapperImpl
(implements owltools.gaf.eco.
TraversingEcoMapper
)
owltools.gaf.
EcoTools
owltools.gaf.
ExtensionExpression
owltools.gaf.
GafDocument
owltools.gaf.
GafObjectsBuilder
owltools.gaf.owl.
GAFOWLBridge
owltools.gaf.owl.
AnnotationExtensionFolder
owltools.gaf.owl.
AnnotationExtensionUnfolder
owltools.gaf.owl.mapping.
BasicABox
owltools.gaf.owl.
GAFOWLBridge.GAFDescription
owltools.gaf.
GAFParser
owltools.gaf.
GeneAnnotation
owltools.gaf.
IdMapping
owltools.gaf.inference.
Prediction
owltools.gaf.owl.
SimpleABoxToGAF
owltools.gaf.inference.
TaxonConstraintsEngine
owltools.gaf.
TaxonTools
java.lang.
Throwable
(implements java.io.
Serializable
)
java.lang.
Exception
owltools.gaf.rules.
AnnotationRulesEngine.AnnotationRuleCheckException
owltools.gaf.
WithInfo
Interface Hierarchy
owltools.gaf.inference.
AnnotationPredictor
owltools.gaf.rules.
AnnotationRule
owltools.gaf.rules.
AnnotationRulesFactory
owltools.gaf.eco.
EcoMapper
owltools.gaf.eco.
TraversingEcoMapper
owltools.gaf.
GafParserListener
Enum Hierarchy
java.lang.
Object
java.lang.
Enum
<E> (implements java.lang.
Comparable
<T>, java.io.
Serializable
)
owltools.gaf.owl.
GAFOWLBridge.BioentityMapping
owltools.gaf.owl.
GAFOWLBridge.Vocab
owltools.gaf.rules.
AnnotationRuleViolation.ViolationType
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