Uses of Class
owltools.gaf.inference.Prediction

Packages that use Prediction
owltools.gaf.inference Perform inference on Gene Associations 
owltools.gaf.rules   
owltools.gaf.rules.go   
 

Uses of Prediction in owltools.gaf.inference
 

Methods in owltools.gaf.inference that return Prediction
protected  Prediction BasicAnnotationPropagator.createPrediction(org.semanticweb.owlapi.model.OWLClass c, String aspect, String with, GeneAnnotation source)
           
protected  Prediction FoldBasedPredictor.getPrediction(GeneAnnotation ann, org.semanticweb.owlapi.model.OWLClass c, String bioentity, String with)
           
protected  Prediction CompositionalClassPredictor.getPrediction(org.semanticweb.owlapi.model.OWLClass c, String bioentity, String with)
          Deprecated.  
 

Methods in owltools.gaf.inference that return types with arguments of type Prediction
 List<Prediction> AnnotationPredictor.getAllPredictions()
           
 List<Prediction> AbstractAnnotationPredictor.getAllPredictions()
           
 List<Prediction> AnnotationPredictor.predict(String bioentity)
           
 List<Prediction> AbstractAnnotationPredictor.predict(String bioentity)
           
 List<Prediction> FoldBasedPredictor.predictForBioEntity(Bioentity e, Collection<GeneAnnotation> anns)
           
 List<Prediction> CompositionalClassPredictor.predictForBioEntity(Bioentity e, Collection<GeneAnnotation> anns)
          Deprecated.  
 List<Prediction> BasicAnnotationPropagator.predictForBioEntity(Bioentity entity, Collection<GeneAnnotation> annotations)
           
 List<Prediction> AnnotationPredictor.predictForBioEntity(Bioentity e, Collection<GeneAnnotation> annotations)
           
 

Method parameters in owltools.gaf.inference with type arguments of type Prediction
protected  void AbstractAnnotationPredictor.setAndFilterRedundantPredictions(Set<Prediction> predictions, Set<org.semanticweb.owlapi.model.OWLClass> aClasses)
          side-effects: removes redundant predictions over all relationships
protected  void AbstractAnnotationPredictor.setAndFilterRedundantPredictions(Set<Prediction> predictions, Set<org.semanticweb.owlapi.model.OWLClass> aClasses, Set<org.semanticweb.owlapi.model.OWLPropertyExpression> overProps)
          side-effects: removes redundant predictions over a set of relationships.
 

Uses of Prediction in owltools.gaf.rules
 

Methods in owltools.gaf.rules that return types with arguments of type Prediction
 List<Prediction> AnnotationRule.getPredictedAnnotations(GafDocument gafDoc, OWLGraphWrapper graph)
          Given a whole GafDocument in plan and OWL format, check for possible new inferred annotations (Prediction).
 List<Prediction> AbstractAnnotationRule.getPredictedAnnotations(GafDocument gafDoc, OWLGraphWrapper graph)
           
 

Uses of Prediction in owltools.gaf.rules.go
 

Methods in owltools.gaf.rules.go that return types with arguments of type Prediction
 List<Prediction> GoAnnotationPredictionRule.getPredictedAnnotations(GafDocument gafDoc, OWLGraphWrapper graph)
           
 



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