owltools.gaf.io
Class PseudoRdfXmlWriter
java.lang.Object
owltools.gaf.io.AbstractXmlWriter
owltools.gaf.io.PseudoRdfXmlWriter
public class PseudoRdfXmlWriter
- extends AbstractXmlWriter
Java implementation to create a legacy pseudo RDF XML file for GO
terms and gene annotations.
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
PseudoRdfXmlWriter
public PseudoRdfXmlWriter()
setProgressReporter
public void setProgressReporter(PseudoRdfXmlWriter.ProgressReporter reporter)
write
public void write(OutputStream stream,
OWLGraphWrapper graph,
List<GafDocument> gafs)
throws IOException
- Write a pseudo RDF XML for the given ontology and gene annotations.
- Parameters:
stream
- graph
- the ontologygafs
- (optional) list of gaf documents or null
- Throws:
IOException
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