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Packages that use Prediction | |
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owltools.gaf.inference | Perform inference on Gene Associations |
owltools.gaf.rules | |
owltools.gaf.rules.go |
Uses of Prediction in owltools.gaf.inference |
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Methods in owltools.gaf.inference that return Prediction | |
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protected Prediction |
BasicAnnotationPropagator.createPrediction(org.semanticweb.owlapi.model.OWLClass c,
String aspect,
String with,
GeneAnnotation source)
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protected Prediction |
FoldBasedPredictor.getPrediction(GeneAnnotation ann,
org.semanticweb.owlapi.model.OWLClass c,
String bioentity,
String with)
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protected Prediction |
CompositionalClassPredictor.getPrediction(org.semanticweb.owlapi.model.OWLClass c,
String bioentity,
String with)
Deprecated. |
Methods in owltools.gaf.inference that return types with arguments of type Prediction | |
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List<Prediction> |
AnnotationPredictor.getAllPredictions()
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List<Prediction> |
AbstractAnnotationPredictor.getAllPredictions()
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List<Prediction> |
AnnotationPredictor.predict(String bioentity)
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List<Prediction> |
AbstractAnnotationPredictor.predict(String bioentity)
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List<Prediction> |
FoldBasedPredictor.predictForBioEntity(Bioentity e,
Collection<GeneAnnotation> anns)
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List<Prediction> |
CompositionalClassPredictor.predictForBioEntity(Bioentity e,
Collection<GeneAnnotation> anns)
Deprecated. |
List<Prediction> |
BasicAnnotationPropagator.predictForBioEntity(Bioentity entity,
Collection<GeneAnnotation> annotations)
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List<Prediction> |
AnnotationPredictor.predictForBioEntity(Bioentity e,
Collection<GeneAnnotation> annotations)
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Method parameters in owltools.gaf.inference with type arguments of type Prediction | |
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protected void |
AbstractAnnotationPredictor.setAndFilterRedundantPredictions(Set<Prediction> predictions,
Set<org.semanticweb.owlapi.model.OWLClass> aClasses)
side-effects: removes redundant predictions over all relationships |
protected void |
AbstractAnnotationPredictor.setAndFilterRedundantPredictions(Set<Prediction> predictions,
Set<org.semanticweb.owlapi.model.OWLClass> aClasses,
Set<org.semanticweb.owlapi.model.OWLPropertyExpression> overProps)
side-effects: removes redundant predictions over a set of relationships. |
Uses of Prediction in owltools.gaf.rules |
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Methods in owltools.gaf.rules that return types with arguments of type Prediction | |
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List<Prediction> |
AnnotationRule.getPredictedAnnotations(GafDocument gafDoc,
OWLGraphWrapper graph)
Given a whole GafDocument in plan and OWL format, check for
possible new inferred annotations (Prediction ). |
List<Prediction> |
AbstractAnnotationRule.getPredictedAnnotations(GafDocument gafDoc,
OWLGraphWrapper graph)
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Uses of Prediction in owltools.gaf.rules.go |
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Methods in owltools.gaf.rules.go that return types with arguments of type Prediction | |
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List<Prediction> |
GoAnnotationPredictionRule.getPredictedAnnotations(GafDocument gafDoc,
OWLGraphWrapper graph)
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