AbstractAnnotationPredictor
AbstractAnnotationRule
AbstractGafWriter
AbstractXmlWriter
AnnotationExtensionFolder
AnnotationExtensionUnfolder
AnnotationPredictor
AnnotationRegularExpressionFromXMLRule
AnnotationRule
AnnotationRulesEngine
AnnotationRulesEngine.AnnotationRuleCheckException
AnnotationRulesEngine.AnnotationRulesEngineResult
AnnotationRulesFactory
AnnotationRulesFactoryImpl
AnnotationRulesReportWriter
AnnotationRuleViolation
AnnotationRuleViolation.ViolationType
AnnotationSource
AnnotationTaxonRule
BasicABox
BasicAnnotationPropagator
BasicChecksRule
Bioentity
ClassTaxonMatrix
CompositeQualifier
CompositionalClassPredictor
EcoMapper
EcoMapperFactory
EcoMapperFactory.OntologyMapperPair
EcoMapperImpl
EcoTools
ExtensionExpression
FoldBasedPredictor
GafDocument
GafLineFilter
GafObjectsBuilder
GAFOWLBridge
GAFOWLBridge.BioentityMapping
GAFOWLBridge.Vocab
GAFParser
GafParserListener
GafToLegoTranslator
GafWriter
GafWriter.BufferedGafWriter
GeneAnnotation
GenericReasonerValidationCheck
GoAnnotationExperimentalPredictionRule
GoAnnotationPredictionRule
GoAnnotationRulesFactoryImpl
GoAnnotationTaxonRule
GoBindingCheckWithFieldRule
GoClassReferenceAnnotationRule
GoICAnnotationRule
GoIDAAnnotationRule
GoIEPRestrictionsRule
GoIPIAnnotationRule
GoIPICatalyticActivityRestrictionsRule
GoMultipleTaxonRule
GoNDAnnotationRule
GoNoHighLevelTermAnnotationRule
GoNoISSProteinBindingRule
GOReciprocalAnnotationRule
IdMapping
NetworkInferenceEngine
Prediction
PseudoRdfXmlWriter
PseudoRdfXmlWriter.ProgressReporter
SimpleABoxToGAF
TaxonConstraintsEngine
TaxonTools
TraversingEcoMapper
TraversingEcoMapperImpl
WithInfo
XgmmlWriter
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