Uses of Class
owltools.gaf.Bioentity

Packages that use Bioentity
owltools.gaf Processing of GO Gene Association Files 
owltools.gaf.inference Perform inference on Gene Associations 
owltools.gaf.owl   
owltools.gaf.owl.mapping   
 

Uses of Bioentity in owltools.gaf
 

Fields in owltools.gaf declared as Bioentity
protected  Bioentity GeneAnnotation.bioentityObject
           
 

Fields in owltools.gaf with type parameters of type Bioentity
protected  Map<String,Bioentity> GafDocument.bioentities
           
 

Methods in owltools.gaf that return Bioentity
 Bioentity GafDocument.getBioentity(String id)
           
 Bioentity GeneAnnotation.getBioentityObject()
           
 

Methods in owltools.gaf that return types with arguments of type Bioentity
 Collection<Bioentity> GafDocument.getBioentities()
           
 

Methods in owltools.gaf with parameters of type Bioentity
 void GafDocument.addBioentity(Bioentity bioentity)
           
 void GeneAnnotation.setBioentityObject(Bioentity bioentityObject)
           
 

Uses of Bioentity in owltools.gaf.inference
 

Methods in owltools.gaf.inference with parameters of type Bioentity
 List<Prediction> FoldBasedPredictor.predictForBioEntity(Bioentity e, Collection<GeneAnnotation> anns)
           
 List<Prediction> CompositionalClassPredictor.predictForBioEntity(Bioentity e, Collection<GeneAnnotation> anns)
          Deprecated.  
 List<Prediction> BasicAnnotationPropagator.predictForBioEntity(Bioentity entity, Collection<GeneAnnotation> annotations)
           
 List<Prediction> AnnotationPredictor.predictForBioEntity(Bioentity e, Collection<GeneAnnotation> annotations)
           
 

Uses of Bioentity in owltools.gaf.owl
 

Methods in owltools.gaf.owl with parameters of type Bioentity
protected  void GAFOWLBridge.translateBioentity(Bioentity e)
           
 

Uses of Bioentity in owltools.gaf.owl.mapping
 

Methods in owltools.gaf.owl.mapping with parameters of type Bioentity
protected  void BasicABox.translateBioentity(Bioentity e)
           
 



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