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java.lang.Objectowltools.gaf.io.AbstractGafWriter
owltools.gaf.io.GafWriter.BufferedGafWriter
public static class GafWriter.BufferedGafWriter
Helper class to create a list of all GeneAnnotation
lines,
excluding any headers.
Can be used for sorting.
Constructor Summary | |
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GafWriter.BufferedGafWriter()
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Method Summary | |
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protected void |
end()
Called after the writing of a GafDocument has been finished. |
List<String> |
getLines()
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protected void |
nl()
Append the separator between rows. |
protected void |
print(String s)
Append an arbitrary string. |
void |
writeHeader(List<String> comments)
Write a header for a GAF, header comments are optional. |
Methods inherited from class owltools.gaf.io.AbstractGafWriter |
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sep, write, write, writeHeader |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public GafWriter.BufferedGafWriter()
Method Detail |
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public void writeHeader(List<String> comments)
AbstractGafWriter
writeHeader
in class AbstractGafWriter
protected void print(String s)
AbstractGafWriter
print
in class AbstractGafWriter
protected void nl()
AbstractGafWriter
nl
in class AbstractGafWriter
protected void end()
AbstractGafWriter
GafDocument
has been finished.
end
in class AbstractGafWriter
public List<String> getLines()
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