Uses of Class
owltools.gaf.rules.AnnotationRuleViolation

Packages that use AnnotationRuleViolation
owltools.gaf.rules   
owltools.gaf.rules.go   
 

Uses of AnnotationRuleViolation in owltools.gaf.rules
 

Methods in owltools.gaf.rules that return types with arguments of type AnnotationRuleViolation
 Set<AnnotationRuleViolation> AnnotationRule.getRuleViolations(GafDocument gafDoc)
          Given a whole GafDocument , find the set of violations using the rule
 Set<AnnotationRuleViolation> AbstractAnnotationRule.getRuleViolations(GafDocument gafDoc)
           
 Set<AnnotationRuleViolation> GenericReasonerValidationCheck.getRuleViolations(GafDocument gafDoc, OWLGraphWrapper graph)
           
 Set<AnnotationRuleViolation> AnnotationTaxonRule.getRuleViolations(GafDocument gafDoc, OWLGraphWrapper graph)
           
 Set<AnnotationRuleViolation> AnnotationRule.getRuleViolations(GafDocument gafDoc, OWLGraphWrapper graph)
          Given a whole GafDocument in OWL, find the set of violations using the rule
 Set<AnnotationRuleViolation> AbstractAnnotationRule.getRuleViolations(GafDocument gafDoc, OWLGraphWrapper graph)
           
 Set<AnnotationRuleViolation> GenericReasonerValidationCheck.getRuleViolations(GeneAnnotation a)
           
 Set<AnnotationRuleViolation> AnnotationTaxonRule.getRuleViolations(GeneAnnotation a)
           
 Set<AnnotationRuleViolation> AnnotationRule.getRuleViolations(GeneAnnotation a)
          Given an annotation, find the set of violations using the rule
 Set<AnnotationRuleViolation> AnnotationRegularExpressionFromXMLRule.getRuleViolations(GeneAnnotation a)
           
abstract  Set<AnnotationRuleViolation> AbstractAnnotationRule.getRuleViolations(GeneAnnotation a)
           
 Map<String,List<AnnotationRuleViolation>> AnnotationRulesEngine.AnnotationRulesEngineResult.getViolations(AnnotationRuleViolation.ViolationType type)
          Retrieve all violations for a given AnnotationRuleViolation.ViolationType.
 

Uses of AnnotationRuleViolation in owltools.gaf.rules.go
 

Methods in owltools.gaf.rules.go that return types with arguments of type AnnotationRuleViolation
 Set<AnnotationRuleViolation> GOReciprocalAnnotationRule.getRuleViolations(GafDocument gafDoc)
           
 Set<AnnotationRuleViolation> GOReciprocalAnnotationRule.getRuleViolations(GeneAnnotation a)
           
 Set<AnnotationRuleViolation> GoNoISSProteinBindingRule.getRuleViolations(GeneAnnotation a)
           
 Set<AnnotationRuleViolation> GoNoHighLevelTermAnnotationRule.getRuleViolations(GeneAnnotation a)
           
 Set<AnnotationRuleViolation> GoNDAnnotationRule.getRuleViolations(GeneAnnotation a)
           
 Set<AnnotationRuleViolation> GoMultipleTaxonRule.getRuleViolations(GeneAnnotation a)
           
 Set<AnnotationRuleViolation> GoIPICatalyticActivityRestrictionsRule.getRuleViolations(GeneAnnotation a)
           
 Set<AnnotationRuleViolation> GoIPIAnnotationRule.getRuleViolations(GeneAnnotation a)
           
 Set<AnnotationRuleViolation> GoIEPRestrictionsRule.getRuleViolations(GeneAnnotation a)
           
 Set<AnnotationRuleViolation> GoIDAAnnotationRule.getRuleViolations(GeneAnnotation a)
           
 Set<AnnotationRuleViolation> GoICAnnotationRule.getRuleViolations(GeneAnnotation a)
           
 Set<AnnotationRuleViolation> GoClassReferenceAnnotationRule.getRuleViolations(GeneAnnotation a)
           
 Set<AnnotationRuleViolation> GoBindingCheckWithFieldRule.getRuleViolations(GeneAnnotation a)
           
 Set<AnnotationRuleViolation> GoAnnotationPredictionRule.getRuleViolations(GeneAnnotation a)
           
 Set<AnnotationRuleViolation> GoAnnotationExperimentalPredictionRule.getRuleViolations(GeneAnnotation a)
           
 Set<AnnotationRuleViolation> BasicChecksRule.getRuleViolations(GeneAnnotation a)
           
 



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