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public interface EcoMapper
Field Summary | |
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static String |
ECO_MAPPING_PURL
Permanent URL for the mapping of GO evidence codes to ECO classes |
static String |
ECO_PURL
Permanent URL for the evidence code ontology (ECO) owl file. |
static org.semanticweb.owlapi.model.IRI |
ECO_PURL_IRI
IRI for the evidence code ontology (ECO) owl file. |
Method Summary | |
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Set<org.semanticweb.owlapi.model.OWLClass> |
getAllEcoClassesForCode(String code)
Retrieve the ECO classes for the given GO evidence code. |
org.semanticweb.owlapi.model.OWLClass |
getEcoClassForCode(String code)
Retrieve the equivalent ECO class for the given GO evidence code. |
org.semanticweb.owlapi.model.OWLClass |
getEcoClassForCode(String code,
String refCode)
Retrieve the ECO class for the given GO evidence code and reference. |
boolean |
isGoEvidenceCode(String code)
Check that the given GO code is a valid code with an existing mapping to ECO |
Field Detail |
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static final String ECO_PURL
static final org.semanticweb.owlapi.model.IRI ECO_PURL_IRI
static final String ECO_MAPPING_PURL
Method Detail |
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org.semanticweb.owlapi.model.OWLClass getEcoClassForCode(String code)
code
-
OWLClass
or nullSet<org.semanticweb.owlapi.model.OWLClass> getAllEcoClassesForCode(String code)
code
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org.semanticweb.owlapi.model.OWLClass getEcoClassForCode(String code, String refCode)
code
- refCode
-
OWLClass
or nullboolean isGoEvidenceCode(String code)
code
-
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