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java.lang.Objectowltools.gaf.eco.EcoMapperImpl
public class EcoMapperImpl
Field Summary |
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Fields inherited from interface owltools.gaf.eco.EcoMapper |
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ECO_MAPPING_PURL, ECO_PURL, ECO_PURL_IRI |
Method Summary | |
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Set<org.semanticweb.owlapi.model.OWLClass> |
getAllEcoClassesForCode(String code)
Retrieve the ECO classes for the given GO evidence code. |
Map<org.semanticweb.owlapi.model.OWLClass,String> |
getCodesForEcoClasses()
Retrieve the mapping from ECO classes to GO evidence codes. |
org.semanticweb.owlapi.model.OWLClass |
getEcoClassForCode(String code)
Retrieve the equivalent ECO class for the given GO evidence code. |
org.semanticweb.owlapi.model.OWLClass |
getEcoClassForCode(String code,
String refCode)
Retrieve the ECO class for the given GO evidence code and reference. |
boolean |
isGoEvidenceCode(String code)
Check that the given GO code is a valid code with an existing mapping to ECO |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Method Detail |
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public org.semanticweb.owlapi.model.OWLClass getEcoClassForCode(String code)
EcoMapper
getEcoClassForCode
in interface EcoMapper
OWLClass
or nullpublic Set<org.semanticweb.owlapi.model.OWLClass> getAllEcoClassesForCode(String code)
EcoMapper
getAllEcoClassesForCode
in interface EcoMapper
public org.semanticweb.owlapi.model.OWLClass getEcoClassForCode(String code, String refCode)
EcoMapper
getEcoClassForCode
in interface EcoMapper
OWLClass
or nullpublic boolean isGoEvidenceCode(String code)
EcoMapper
isGoEvidenceCode
in interface EcoMapper
public Map<org.semanticweb.owlapi.model.OWLClass,String> getCodesForEcoClasses()
EcoMapper
getCodesForEcoClasses
in interface EcoMapper
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