owltools.gaf.rules.go
Class GoIPIAnnotationRule

java.lang.Object
  extended by owltools.gaf.rules.AbstractAnnotationRule
      extended by owltools.gaf.rules.go.GoIPIAnnotationRule
All Implemented Interfaces:
AnnotationRule

public class GoIPIAnnotationRule
extends AbstractAnnotationRule

GO_AR:0000018


Field Summary
static String PERMANENT_JAVA_ID
          The string to identify this class in the annotation_qc.xml and related factories.
 
Constructor Summary
GoIPIAnnotationRule(TraversingEcoMapper eco)
           
 
Method Summary
 Set<AnnotationRuleViolation> getRuleViolations(GeneAnnotation a)
          Given an annotation, find the set of violations using the rule
 
Methods inherited from class owltools.gaf.rules.AbstractAnnotationRule
getDate, getDescription, getGrandFatheringDate, getName, getPredictedAnnotations, getRuleId, getRuleViolations, getRuleViolations, getStatus, hasGrandFathering, isAnnotationLevel, isDocumentLevel, isInferringAnnotations, isOwlDocumentLevel, setDate, setDescription, setGrandFatheringDate, setName, setRuleId, setStatus
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

PERMANENT_JAVA_ID

public static final String PERMANENT_JAVA_ID
The string to identify this class in the annotation_qc.xml and related factories. This is not supposed to be changed.

See Also:
Constant Field Values
Constructor Detail

GoIPIAnnotationRule

public GoIPIAnnotationRule(TraversingEcoMapper eco)
Method Detail

getRuleViolations

public Set<AnnotationRuleViolation> getRuleViolations(GeneAnnotation a)
Description copied from interface: AnnotationRule
Given an annotation, find the set of violations using the rule

Specified by:
getRuleViolations in interface AnnotationRule
Specified by:
getRuleViolations in class AbstractAnnotationRule
Parameters:
a - annotation
Returns:
set of violations
See Also:
AnnotationRule.isAnnotationLevel()


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