Class Summary |
GafToLegoTranslator |
Given a set of gene associations, this procedure will generate LEGO individuals. |
LegoModelGenerator |
Generates an augmented Minimal Model (aka LEGO) graph for a given process,
given an ontology and a set of annotations. |
ManchesterSyntaxTool |
Wrapper for parsing OWL Manchester Syntax using a OWLGraphWrapper . |
MolecularModelJsonRenderer |
A Renderer that takes a MolecularModel (an OWL ABox) and generates Map objects
that can be translated to JSON using Gson. |
MolecularModelManager |
Manager object for operations on collections of MolecularModels (aka lego diagrams)
any number of models can be loaded at any time (todo - impose some limit to avoid
using too much memory)
each model has a generator, an OWLOntology (containing the set of class assertions)
and a reasoner associated with it (todo - test memory requirements)
This manager is designed to be used within a web server. |
NetworkInferenceEngine |
Deprecated. |