Package owltools.gaf

Processing of GO Gene Association Files

See:
          Description

Class Summary
AnnotationSource  
Bioentity  
EcoTools Deprecated. use EcoMapper, TraversingEcoMapper and EcoMapperFactory.
ExtensionExpression Corresponds to col16 in GAF2.0
GafDocument Representation of a gene annotation file (GAF).
GeneAnnotation Representation of a gene annotation.
IdMapping  
TaxonTools Methods to simplify the work with the evidence code ontology (ECO).
 

Package owltools.gaf Description

Processing of GO Gene Association Files

This package contains gaf file parser GAFParser, and also contains GafObjectsBuilder to build Document Object Model from a gaf file. See gaf.GAFParserTest and gaf.GafObjectsBuilderTest classes to see examples how to use GafParser and GafObjectsBuilder classes.



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