owltools.gaf.rules.go
Class GoAnnotationRulesFactoryImpl
java.lang.Object
owltools.gaf.rules.AnnotationRulesFactoryImpl
owltools.gaf.rules.go.GoAnnotationRulesFactoryImpl
- All Implemented Interfaces:
- AnnotationRulesFactory
public class GoAnnotationRulesFactoryImpl
- extends AnnotationRulesFactoryImpl
Constructor Summary |
GoAnnotationRulesFactoryImpl(OWLGraphWrapper graph,
TraversingEcoMapper eco,
boolean createOntologyModules)
|
GoAnnotationRulesFactoryImpl(ParserWrapper parserWrapper,
boolean createOntologyModules)
|
GoAnnotationRulesFactoryImpl(String qcfile,
String xrfabbslocation,
OWLGraphWrapper graph,
TraversingEcoMapper eco,
boolean createOntologyModules)
|
GoAnnotationRulesFactoryImpl(String qcfile,
String xrfabbslocation,
ParserWrapper p,
List<String> ont,
String eco,
boolean createOntologyModules)
|
GoAnnotationRulesFactoryImpl(String qcfile,
String xrfabbslocation,
ParserWrapper p,
String go,
String gorel,
String eco)
Deprecated. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
GoAnnotationRulesFactoryImpl
public GoAnnotationRulesFactoryImpl(ParserWrapper parserWrapper,
boolean createOntologyModules)
GoAnnotationRulesFactoryImpl
@Deprecated
public GoAnnotationRulesFactoryImpl(String qcfile,
String xrfabbslocation,
ParserWrapper p,
String go,
String gorel,
String eco)
- Deprecated.
GoAnnotationRulesFactoryImpl
public GoAnnotationRulesFactoryImpl(String qcfile,
String xrfabbslocation,
ParserWrapper p,
List<String> ont,
String eco,
boolean createOntologyModules)
GoAnnotationRulesFactoryImpl
public GoAnnotationRulesFactoryImpl(OWLGraphWrapper graph,
TraversingEcoMapper eco,
boolean createOntologyModules)
GoAnnotationRulesFactoryImpl
public GoAnnotationRulesFactoryImpl(String qcfile,
String xrfabbslocation,
OWLGraphWrapper graph,
TraversingEcoMapper eco,
boolean createOntologyModules)
handleAdditionalRules
protected void handleAdditionalRules(List<AnnotationRule> annotationRules,
List<AnnotationRule> documentRules,
List<AnnotationRule> owlRules,
List<AnnotationRule> inferenceRules,
List<AnnotationRule> experimentalInferenceRules)
- Overrides:
handleAdditionalRules
in class AnnotationRulesFactoryImpl
getClassForName
protected AnnotationRule getClassForName(String className)
throws Exception
- Overrides:
getClassForName
in class AnnotationRulesFactoryImpl
- Returns:
- annotation rule (never null)
- Throws:
Exception
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