owltools.gaf.lego
Class NetworkInferenceEngine.ActivityNetwork

java.lang.Object
  extended by owltools.gaf.lego.NetworkInferenceEngine.ActivityNetwork
Enclosing class:
NetworkInferenceEngine

public class NetworkInferenceEngine.ActivityNetwork
extends Object

NA = (A, EA)
A network/graph of activity nodes


Field Summary
 Set<NetworkInferenceEngine.Edge<NetworkInferenceEngine.Activity,NetworkInferenceEngine.Activity>> activityEdgeSet
           
 Set<NetworkInferenceEngine.Activity> activitySet
           
 
Constructor Summary
NetworkInferenceEngine.ActivityNetwork()
           
 
Method Summary
 void add(NetworkInferenceEngine.Activity a)
           
 void addEdge(NetworkInferenceEngine.Activity s, NetworkInferenceEngine.Activity o, org.semanticweb.owlapi.model.OWLObjectPropertyExpression owlObjectPropertyExpression)
           
 Set<NetworkInferenceEngine.Activity> lookupByActivityType(org.semanticweb.owlapi.model.OWLClassExpression t)
           
 Set<NetworkInferenceEngine.Activity> lookupByGene(String g)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

activitySet

public Set<NetworkInferenceEngine.Activity> activitySet

activityEdgeSet

public Set<NetworkInferenceEngine.Edge<NetworkInferenceEngine.Activity,NetworkInferenceEngine.Activity>> activityEdgeSet
Constructor Detail

NetworkInferenceEngine.ActivityNetwork

public NetworkInferenceEngine.ActivityNetwork()
Method Detail

add

public void add(NetworkInferenceEngine.Activity a)

addEdge

public void addEdge(NetworkInferenceEngine.Activity s,
                    NetworkInferenceEngine.Activity o,
                    org.semanticweb.owlapi.model.OWLObjectPropertyExpression owlObjectPropertyExpression)

lookupByGene

public Set<NetworkInferenceEngine.Activity> lookupByGene(String g)

lookupByActivityType

public Set<NetworkInferenceEngine.Activity> lookupByActivityType(org.semanticweb.owlapi.model.OWLClassExpression t)


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