owltools.gaf.godb
Class GoMySQLDatabaseDumper
java.lang.Object
owltools.gaf.godb.Dumper
owltools.gaf.godb.DatabaseDumper
owltools.gaf.godb.GoMySQLDatabaseDumper
public class GoMySQLDatabaseDumper
- extends DatabaseDumper
implements DatabaseDumper for GO MySQL db
- Author:
- cjm
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
GoMySQLDatabaseDumper
public GoMySQLDatabaseDumper(OWLGraphWrapper g)
- Parameters:
g
-
dump
public void dump()
throws IOException,
ReferentialIntegrityException
- dumps all tables
- Specified by:
dump
in class Dumper
- Throws:
IOException
ReferentialIntegrityException
dumpGraphModule
public void dumpGraphModule()
throws IOException,
ReferentialIntegrityException
- Throws:
IOException
ReferentialIntegrityException
dumpTermTable
public void dumpTermTable()
throws IOException,
ReferentialIntegrityException
- Throws:
IOException
ReferentialIntegrityException
dumpTermSubsetTable
public void dumpTermSubsetTable()
throws IOException,
ReferentialIntegrityException
- Throws:
IOException
ReferentialIntegrityException
dumpTerm2TermTable
public void dumpTerm2TermTable()
throws IOException,
ReferentialIntegrityException
- Throws:
IOException
ReferentialIntegrityException
dumpMetaModule
public void dumpMetaModule()
throws IOException,
ReferentialIntegrityException
- Throws:
IOException
ReferentialIntegrityException
dumpDbxrefTable
public void dumpDbxrefTable()
throws IOException,
ReferentialIntegrityException
- Throws:
IOException
ReferentialIntegrityException
dumpOptModule
public void dumpOptModule()
throws IOException,
ReferentialIntegrityException
- Throws:
IOException
ReferentialIntegrityException
dumpGraphPathTable
public void dumpGraphPathTable()
throws IOException,
ReferentialIntegrityException
- Throws:
IOException
ReferentialIntegrityException
dumpAssociationModule
public void dumpAssociationModule()
throws IOException,
ReferentialIntegrityException
- Throws:
IOException
ReferentialIntegrityException
dumpSpeciesTable
public void dumpSpeciesTable()
throws IOException,
ReferentialIntegrityException
- Throws:
IOException
ReferentialIntegrityException
dumpSpeciesRow
public void dumpSpeciesRow(PrintStream s,
String taxId)
throws IOException,
ReferentialIntegrityException
- Throws:
IOException
ReferentialIntegrityException
dumpAssociationTable
public void dumpAssociationTable()
throws IOException,
ReferentialIntegrityException
- Throws:
IOException
ReferentialIntegrityException
dumpAssociationRowsForGaf
public void dumpAssociationRowsForGaf(PrintStream s,
GafDocument gafdoc)
throws IOException,
ReferentialIntegrityException
- Throws:
IOException
ReferentialIntegrityException
dumpGeneProductRowsForGaf
public void dumpGeneProductRowsForGaf(PrintStream s,
GafDocument gafdoc)
throws IOException,
ReferentialIntegrityException
- Throws:
IOException
ReferentialIntegrityException
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