owltools.gaf.parser
Class GpadGpiObjectsBuilder

java.lang.Object
  extended by owltools.gaf.parser.GpadGpiObjectsBuilder

public class GpadGpiObjectsBuilder
extends Object


Nested Class Summary
static interface GpadGpiObjectsBuilder.AspectProvider
           
 
Constructor Summary
GpadGpiObjectsBuilder(SimpleEcoMapper ecoMapper)
           
 
Method Summary
 void addGpadFilter(LineFilter<GpadParser> filter)
           
 void addGpiFilter(LineFilter<GpiParser> filter)
           
 GafDocument loadGpadGpi(File gpad, File gpi)
           
protected  void reportUnknowBioentityId(String db, String objectId, String fullId)
           
 void setAspectProvider(GpadGpiObjectsBuilder.AspectProvider aspectProvider)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

GpadGpiObjectsBuilder

public GpadGpiObjectsBuilder(SimpleEcoMapper ecoMapper)
Method Detail

addGpadFilter

public void addGpadFilter(LineFilter<GpadParser> filter)

addGpiFilter

public void addGpiFilter(LineFilter<GpiParser> filter)

loadGpadGpi

public GafDocument loadGpadGpi(File gpad,
                               File gpi)
                        throws IOException
Throws:
IOException

setAspectProvider

public void setAspectProvider(GpadGpiObjectsBuilder.AspectProvider aspectProvider)

reportUnknowBioentityId

protected void reportUnknowBioentityId(String db,
                                       String objectId,
                                       String fullId)


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