Uses of Interface
owltools.gaf.eco.TraversingEcoMapper

Packages that use TraversingEcoMapper
owltools.gaf.eco   
owltools.gaf.rules.go   
 

Uses of TraversingEcoMapper in owltools.gaf.eco
 

Classes in owltools.gaf.eco that implement TraversingEcoMapper
 class TraversingEcoMapperImpl
           
 

Methods in owltools.gaf.eco that return TraversingEcoMapper
static TraversingEcoMapper EcoMapperFactory.createTraversingEcoMapper(OWLGraphWrapper all, org.semanticweb.owlapi.reasoner.OWLReasoner reasoner, boolean disposeReasoner)
          Create a TraversingEcoMapper instance using the given OWLGraphWrapper.
 

Methods in owltools.gaf.eco that return types with arguments of type TraversingEcoMapper
static EcoMapperFactory.OntologyMapperPair<TraversingEcoMapper> EcoMapperFactory.createTraversingEcoMapper()
          Create a TraversingEcoMapper instance using a new ParserWrapper to load ECO.
static EcoMapperFactory.OntologyMapperPair<TraversingEcoMapper> EcoMapperFactory.createTraversingEcoMapper(ParserWrapper p)
          Create a TraversingEcoMapper instance using the given ParserWrapper to load ECO.
static EcoMapperFactory.OntologyMapperPair<TraversingEcoMapper> EcoMapperFactory.createTraversingEcoMapper(ParserWrapper p, String location)
          Create a TraversingEcoMapper instance using the given ParserWrapper to load ECO from the given location.
 

Uses of TraversingEcoMapper in owltools.gaf.rules.go
 

Constructors in owltools.gaf.rules.go with parameters of type TraversingEcoMapper
BasicChecksRule(String xrefAbbsLocation, TraversingEcoMapper eco)
           
GoAnnotationRulesFactoryImpl(OWLGraphWrapper graph, TraversingEcoMapper eco, boolean createOntologyModules)
           
GoAnnotationRulesFactoryImpl(String qcfile, String xrfabbslocation, OWLGraphWrapper graph, TraversingEcoMapper eco, boolean createOntologyModules)
           
GoBindingCheckWithFieldRule(TraversingEcoMapper eco)
           
GoICAnnotationRule(TraversingEcoMapper eco)
           
GoIDAAnnotationRule(TraversingEcoMapper eco)
           
GoIEPRestrictionsRule(OWLGraphWrapper graph, TraversingEcoMapper eco)
           
GoIPIAnnotationRule(TraversingEcoMapper eco)
           
GoIPICatalyticActivityRestrictionsRule(OWLGraphWrapper graph, TraversingEcoMapper eco)
           
GoNDAnnotationRule(TraversingEcoMapper eco)
           
GoNoHighLevelTermAnnotationRule(OWLGraphWrapper go, TraversingEcoMapper eco)
           
GoNoISSProteinBindingRule(TraversingEcoMapper eco)
           
GoNoISSProteinBindingRule(TraversingEcoMapper eco, AnnotationRuleViolation.ViolationType violationType)
           
GOReciprocalAnnotationRule(OWLGraphWrapper graph, TraversingEcoMapper eco)
           
 



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