Constant Field Values


Contents
owltools.gaf.*

owltools.gaf.EcoTools
public static final String ECO_PURL "http://purl.obolibrary.org/obo/eco.owl"

owltools.gaf.TaxonTools
public static final String TAXON_PURL "http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim.owl"

owltools.gaf.eco.EcoMapper
public static final String ECO_MAPPING_PURL "http://purl.obolibrary.org/obo/eco/gaf-eco-mapping.txt"
public static final String ECO_PURL "http://purl.obolibrary.org/obo/eco.owl"

owltools.gaf.parser.GAFParser
public static final int ANNOTATION_XP 15
public static final int ASPECT 8
public static final int ASSIGNED_BY 14
public static final int DATE 13
public static final int DB 0
public static final int DB_OBJECT_ID 1
public static final int DB_OBJECT_NAME 9
public static final int DB_OBJECT_SYMBOL 2
public static final int DB_OBJECT_SYNONYM 10
public static final int DB_OBJECT_TYPE 11
public static final int EVIDENCE 6
public static final int GENE_PRODUCT_ISOFORM 16
public static final int GOID 4
public static final int QUALIFIER 3
public static final int REFERENCE 5
public static final int TAXON 12
public static final int WITH 7

owltools.gaf.rules.GenericReasonerValidationCheck
public static final String PERMANENT_JAVA_ID "org.geneontology.gold.rules.GenericReasonerValidationCheck"

owltools.gaf.rules.go.BasicChecksRule
public static final String PERMANENT_JAVA_ID "org.geneontology.gold.rules.BasicChecksRule"

owltools.gaf.rules.go.GoAnnotationExperimentalPredictionRule
public static final String PERMANENT_JAVA_ID "org.geneontology.gold.rules.GoAnnotationExperimentalPredictionRule"

owltools.gaf.rules.go.GoAnnotationPredictionRule
public static final String PERMANENT_JAVA_ID "org.geneontology.gold.rules.GoAnnotationPredictionRule"

owltools.gaf.rules.go.GoAnnotationTaxonRule
public static final String PERMANENT_JAVA_ID "org.geneontology.gold.rules.AnnotationTaxonRule"

owltools.gaf.rules.go.GoBindingCheckWithFieldRule
public static final String PERMANENT_JAVA_ID "org.geneontology.rules.GO_AR_0000003"

owltools.gaf.rules.go.GoClassReferenceAnnotationRule
public static final String PERMANENT_JAVA_ID "org.geneontology.gold.rules.GoClassReferenceAnnotationRule"

owltools.gaf.rules.go.GoICAnnotationRule
public static final String PERMANENT_JAVA_ID "org.geneontology.rules.GO_AR_0000016"

owltools.gaf.rules.go.GoIDAAnnotationRule
public static final String PERMANENT_JAVA_ID "org.geneontology.rules.GO_AR_0000017"

owltools.gaf.rules.go.GoIEPRestrictionsRule
public static final String PERMANENT_JAVA_ID "org.geneontology.rules.GO_AR_0000006"

owltools.gaf.rules.go.GoIPIAnnotationRule
public static final String PERMANENT_JAVA_ID "org.geneontology.rules.GO_AR_0000018"

owltools.gaf.rules.go.GoIPICatalyticActivityRestrictionsRule
public static final String PERMANENT_JAVA_ID "org.geneontology.rules.GO_AR_0000007"

owltools.gaf.rules.go.GoMultipleTaxonRule
public static final String PERMANENT_JAVA_ID "org.geneontology.rules.GO_AR_0000015"

owltools.gaf.rules.go.GoNDAnnotationRule
public static final String PERMANENT_JAVA_ID "org.geneontology.rules.GO_AR_0000011"

owltools.gaf.rules.go.GoNoHighLevelTermAnnotationRule
public static final String PERMANENT_JAVA_ID "org.geneontology.rules.GO_AR_0000008"

owltools.gaf.rules.go.GoNoISSProteinBindingRule
public static final String PERMANENT_JAVA_ID "org.geneontology.rules.GO_AR_0000005"

owltools.gaf.rules.go.GOReciprocalAnnotationRule
public static final String PERMANENT_JAVA_ID "org.geneontology.rules.GO_AR_0000004"



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