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Packages that use MolecularModelManager.OWLOperationResponse | |
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owltools.gaf.lego |
Uses of MolecularModelManager.OWLOperationResponse in owltools.gaf.lego |
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Methods in owltools.gaf.lego that return MolecularModelManager.OWLOperationResponse | |
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MolecularModelManager.OWLOperationResponse |
MolecularModelManager.addAnnotations(String modelId,
org.semanticweb.owlapi.model.OWLObjectPropertyExpression p,
org.semanticweb.owlapi.model.OWLNamedIndividual i,
org.semanticweb.owlapi.model.OWLNamedIndividual j,
Set<org.semanticweb.owlapi.model.OWLAnnotation> annotations)
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MolecularModelManager.OWLOperationResponse |
MolecularModelManager.addCompositeIndividual(String modelId,
String classId,
String enabledById,
String occursInId)
A simple wrapping function that captures the most basic type of editing. |
MolecularModelManager.OWLOperationResponse |
MolecularModelManager.addEnabledBy(String modelId,
org.semanticweb.owlapi.model.OWLNamedIndividual i,
org.semanticweb.owlapi.model.OWLClassExpression enabler)
Adds a ClassAssertion to the model, connecting an activity instance to the class of molecule that enables the activity. |
MolecularModelManager.OWLOperationResponse |
MolecularModelManager.addEnabledBy(String modelId,
String iid,
String eid)
Convenience wrapper for MolecularModelManager.addEnabledBy(String, OWLNamedIndividual, OWLClassExpression) |
MolecularModelManager.OWLOperationResponse |
MolecularModelManager.addFact(String modelId,
OBOUpperVocabulary vocabElement,
org.semanticweb.owlapi.model.OWLNamedIndividual i,
org.semanticweb.owlapi.model.OWLNamedIndividual j,
Set<org.semanticweb.owlapi.model.OWLAnnotation> annotations)
Convenience wrapper for MolecularModelManager.addFact(String, OWLObjectPropertyExpression, OWLNamedIndividual, OWLNamedIndividual, Set) |
MolecularModelManager.OWLOperationResponse |
MolecularModelManager.addFact(String modelId,
OBOUpperVocabulary vocabElement,
String iid,
String jid,
Collection<org.apache.commons.lang3.tuple.Pair<String,String>> pairs)
Convenience wrapper for MolecularModelManager.addFact(String, OWLObjectPropertyExpression, OWLNamedIndividual, OWLNamedIndividual, Set) |
MolecularModelManager.OWLOperationResponse |
MolecularModelManager.addFact(String modelId,
org.semanticweb.owlapi.model.OWLObjectPropertyExpression p,
org.semanticweb.owlapi.model.OWLNamedIndividual i,
org.semanticweb.owlapi.model.OWLNamedIndividual j,
Set<org.semanticweb.owlapi.model.OWLAnnotation> annotations)
Adds triple (i,p,j) to specified model |
MolecularModelManager.OWLOperationResponse |
MolecularModelManager.addFact(String modelId,
String pid,
String iid,
String jid,
Collection<org.apache.commons.lang3.tuple.Pair<String,String>> pairs)
Convenience wrapper for MolecularModelManager.addFact(String, OWLObjectPropertyExpression, OWLNamedIndividual, OWLNamedIndividual, Set) |
MolecularModelManager.OWLOperationResponse |
MolecularModelManager.addOccursIn(String modelId,
org.semanticweb.owlapi.model.OWLNamedIndividual i,
org.semanticweb.owlapi.model.OWLClassExpression enabler)
Adds a ClassAssertion to the model, connecting an activity instance to the class of molecule that enables the activity. |
MolecularModelManager.OWLOperationResponse |
MolecularModelManager.addOccursIn(String modelId,
String iid,
String eid)
Convenience wrapper for MolecularModelManager.addOccursIn(String, OWLNamedIndividual, OWLClassExpression) |
MolecularModelManager.OWLOperationResponse |
MolecularModelManager.addPartOf(String modelId,
org.semanticweb.owlapi.model.OWLNamedIndividual i,
org.semanticweb.owlapi.model.OWLNamedIndividual j,
Set<org.semanticweb.owlapi.model.OWLAnnotation> annotations)
Adds an OWL ObjectPropertyAssertion connecting i to j via part_of Note that the inverse assertion is entailed, but not asserted |
MolecularModelManager.OWLOperationResponse |
MolecularModelManager.addPartOf(String modelId,
String iid,
String jid,
Collection<org.apache.commons.lang3.tuple.Pair<String,String>> pairs)
Convenience wrapper for MolecularModelManager.addPartOf(String, OWLNamedIndividual, OWLNamedIndividual, Set) |
MolecularModelManager.OWLOperationResponse |
MolecularModelManager.addType(String modelId,
org.semanticweb.owlapi.model.OWLNamedIndividual i,
org.semanticweb.owlapi.model.OWLClass c)
Adds ClassAssertion(c,i) to specified model |
MolecularModelManager.OWLOperationResponse |
MolecularModelManager.addType(String modelId,
org.semanticweb.owlapi.model.OWLNamedIndividual i,
org.semanticweb.owlapi.model.OWLObjectPropertyExpression p,
org.semanticweb.owlapi.model.OWLClassExpression filler)
Adds a ClassAssertion, where the class expression instantiated is an ObjectSomeValuesFrom expression Example: Individual: i Type: enabledBy some PRO_123 |
MolecularModelManager.OWLOperationResponse |
MolecularModelManager.addType(String modelId,
String iid,
String cid)
Convenience wrapper for MolecularModelManager.addType(String, OWLNamedIndividual, OWLClass) |
MolecularModelManager.OWLOperationResponse |
MolecularModelManager.addType(String modelId,
String iid,
String pid,
String cid)
Convenience wrapper for MolecularModelManager.addType(String, OWLNamedIndividual, OWLObjectPropertyExpression, OWLClassExpression) |
MolecularModelManager.OWLOperationResponse |
MolecularModelManager.createIndividual(String modelId,
org.semanticweb.owlapi.model.OWLClass c)
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MolecularModelManager.OWLOperationResponse |
MolecularModelManager.createIndividual(String modelId,
String cid,
Collection<org.apache.commons.lang3.tuple.Pair<String,String>> annotations)
Shortcut for MolecularModelManager.createIndividual(String, OWLClass) |
MolecularModelManager.OWLOperationResponse |
MolecularModelManager.deleteIndividual(String modelId,
org.semanticweb.owlapi.model.OWLNamedIndividual i)
Deletes an individual |
MolecularModelManager.OWLOperationResponse |
MolecularModelManager.deleteIndividual(String modelId,
String iid)
Deletes an individual |
MolecularModelManager.OWLOperationResponse |
MolecularModelManager.getIndividualById(String modelId,
String iid)
Get the individual information for return. |
MolecularModelManager.OWLOperationResponse |
MolecularModelManager.removeFact(String modelId,
org.semanticweb.owlapi.model.OWLObjectPropertyExpression p,
org.semanticweb.owlapi.model.OWLNamedIndividual i,
org.semanticweb.owlapi.model.OWLNamedIndividual j)
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MolecularModelManager.OWLOperationResponse |
MolecularModelManager.removeFact(String modelId,
String pid,
String iid,
String jid)
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MolecularModelManager.OWLOperationResponse |
MolecularModelManager.removeType(String modelId,
org.semanticweb.owlapi.model.OWLNamedIndividual i,
org.semanticweb.owlapi.model.OWLClass c)
remove ClassAssertion(c,i) to specified model |
MolecularModelManager.OWLOperationResponse |
MolecularModelManager.removeType(String modelId,
org.semanticweb.owlapi.model.OWLNamedIndividual i,
org.semanticweb.owlapi.model.OWLObjectPropertyExpression p,
org.semanticweb.owlapi.model.OWLClassExpression filler)
Removes a ClassAssertion, where the class expression instantiated is an ObjectSomeValuesFrom expression TODO - in future it should be possible to remove multiple assertions by leaving some fields null |
MolecularModelManager.OWLOperationResponse |
MolecularModelManager.removeType(String modelId,
String iid,
String cid)
Convenience wrapper for MolecularModelManager.removeType(String, OWLNamedIndividual, OWLClass) |
MolecularModelManager.OWLOperationResponse |
MolecularModelManager.undo(String modelId,
String changeId)
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