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Packages that use owltools.gaf.lego | |
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owltools.gaf.lego |
Classes in owltools.gaf.lego used by owltools.gaf.lego | |
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LegoModelGenerator
Generates an augmented Minimal Model (aka LEGO) graph for a given process, given an ontology and a set of annotations. |
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MolecularModelJsonRenderer.KEY
JSON-LD keywords for elements of different vocabularies: RDF OWL GO RO TODO: use a complex enum to generate IRIs for each |
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MolecularModelJsonRenderer.VAL
merge with KEY? |
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MolecularModelManager
Manager object for operations on collections of MolecularModels (aka lego diagrams) any number of models can be loaded at any time (todo - impose some limit to avoid using too much memory) each model has a generator, an OWLOntology (containing the set of class assertions) and a reasoner associated with it (todo - test memory requirements) This manager is designed to be used within a web server. |
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MolecularModelManager.LegoAnnotationType
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MolecularModelManager.OWLOperationResponse
Represents the reponse to a requested translation on an ontology/model |
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MolecularModelManager.UnknownIdentifierException
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NetworkInferenceEngine.Activity
Deprecated. A ⊆ G x TA An instance of an activity that is enabled by some gene/product |
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NetworkInferenceEngine.ActivityNetwork
Deprecated. NA = (A, EA) A network/graph of activity nodes |
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NetworkInferenceEngine.Edge
Deprecated. EdgeType can be null for unknown (i.e. |
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NetworkInferenceEngine.InstanceNode
Deprecated. |
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NetworkInferenceEngine.Partonomy
Deprecated. M : Merelogy (partonomy), from activity instances to process instances, and between process instances. |
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