Uses of Package
owltools.gaf

Packages that use owltools.gaf
owltools.gaf Processing of GO Gene Association Files 
owltools.gaf.godb This will replace go-db-perl MySQL loader 
owltools.gaf.inference Perform inference on Gene Associations 
owltools.gaf.io   
owltools.gaf.lego   
owltools.gaf.owl   
owltools.gaf.owl.mapping   
owltools.gaf.parser   
owltools.gaf.rules   
owltools.gaf.rules.go   
 

Classes in owltools.gaf used by owltools.gaf
AnnotationSource
           
Bioentity
           
ExtensionExpression
          Corresponds to col16 in GAF2.0
GeneAnnotation
          Representation of a gene annotation.
 

Classes in owltools.gaf used by owltools.gaf.godb
GafDocument
          Representation of a gene annotation file (GAF).
 

Classes in owltools.gaf used by owltools.gaf.inference
Bioentity
           
GafDocument
          Representation of a gene annotation file (GAF).
GeneAnnotation
          Representation of a gene annotation.
 

Classes in owltools.gaf used by owltools.gaf.io
Bioentity
           
GafDocument
          Representation of a gene annotation file (GAF).
GeneAnnotation
          Representation of a gene annotation.
 

Classes in owltools.gaf used by owltools.gaf.lego
GafDocument
          Representation of a gene annotation file (GAF).
GeneAnnotation
          Representation of a gene annotation.
 

Classes in owltools.gaf used by owltools.gaf.owl
Bioentity
           
ExtensionExpression
          Corresponds to col16 in GAF2.0
GafDocument
          Representation of a gene annotation file (GAF).
GeneAnnotation
          Representation of a gene annotation.
 

Classes in owltools.gaf used by owltools.gaf.owl.mapping
Bioentity
           
GeneAnnotation
          Representation of a gene annotation.
 

Classes in owltools.gaf used by owltools.gaf.parser
ExtensionExpression
          Corresponds to col16 in GAF2.0
GafDocument
          Representation of a gene annotation file (GAF).
 

Classes in owltools.gaf used by owltools.gaf.rules
GafDocument
          Representation of a gene annotation file (GAF).
GeneAnnotation
          Representation of a gene annotation.
 

Classes in owltools.gaf used by owltools.gaf.rules.go
GafDocument
          Representation of a gene annotation file (GAF).
GeneAnnotation
          Representation of a gene annotation.
 



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