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java.lang.Objectowltools.gaf.bioentities.QuestForOrthologsSeqXMLParser
public class QuestForOrthologsSeqXMLParser
This is an event based parser for the seq XML produced by the Quest for
Orthologs project.
Add listeners to retrieve the information. There are two types of listeners.
The QuestForOrthologsSeqXMLParser.ProteinListener
gives a primary id and some labels. The
QuestForOrthologsSeqXMLParser.MoreInfoProteinListener
will provide additionally all available
alternative identifiers and sequence via the QuestForOrthologsSeqXMLParser.MoreInfoProteinListener.MoreInfo
object.
QuestForOrthologsSeqXMLParser.ProteinListener
,
QuestForOrthologsSeqXMLParser.MoreInfoProteinListener
Nested Class Summary | |
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static interface |
QuestForOrthologsSeqXMLParser.MoreInfoProteinListener
Listener of QuestForOrthologsSeqXMLParser . |
static interface |
QuestForOrthologsSeqXMLParser.ProteinListener
Listener for QuestForOrthologsSeqXMLParser . |
Constructor Summary | |
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QuestForOrthologsSeqXMLParser()
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Method Summary | |
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void |
addListener(QuestForOrthologsSeqXMLParser.MoreInfoProteinListener listener)
Add a QuestForOrthologsSeqXMLParser.MoreInfoProteinListener . |
void |
addListener(QuestForOrthologsSeqXMLParser.ProteinListener listener)
Add a QuestForOrthologsSeqXMLParser.ProteinListener . |
void |
parse(InputStream inputStream)
Parse the content of the stream with an event-based XML parser. Content is only provided to registered listeners. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public QuestForOrthologsSeqXMLParser()
Method Detail |
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public void addListener(QuestForOrthologsSeqXMLParser.ProteinListener listener)
QuestForOrthologsSeqXMLParser.ProteinListener
.
listener
- public void addListener(QuestForOrthologsSeqXMLParser.MoreInfoProteinListener listener)
QuestForOrthologsSeqXMLParser.MoreInfoProteinListener
.
listener
- public void parse(InputStream inputStream) throws XMLStreamException
inputStream
-
XMLStreamException
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