Uses of Package
owltools.gaf.lego

Packages that use owltools.gaf.lego
owltools.gaf.lego   
 

Classes in owltools.gaf.lego used by owltools.gaf.lego
LegoModelGenerator
          Generates an augmented Minimal Model (aka LEGO) graph for a given process, given an ontology and a set of annotations.
MolecularModelJsonRenderer.KEY
          JSON-LD keywords for elements of different vocabularies: RDF OWL GO RO TODO: use a complex enum to generate IRIs for each
MolecularModelJsonRenderer.VAL
          merge with KEY?
MolecularModelManager
          Manager object for operations on collections of MolecularModels (aka lego diagrams) any number of models can be loaded at any time (todo - impose some limit to avoid using too much memory) each model has a generator, an OWLOntology (containing the set of class assertions) and a reasoner associated with it (todo - test memory requirements) This manager is designed to be used within a web server.
MolecularModelManager.LegoAnnotationType
           
MolecularModelManager.OWLOperationResponse
          Represents the reponse to a requested translation on an ontology/model
MolecularModelManager.UnknownIdentifierException
           
NetworkInferenceEngine.Activity
          Deprecated. A ⊆ G x TA
An instance of an activity that is enabled by some gene/product
NetworkInferenceEngine.ActivityNetwork
          Deprecated. NA = (A, EA)
A network/graph of activity nodes
NetworkInferenceEngine.Edge
          Deprecated. 
EdgeType can be null for unknown (i.e.
NetworkInferenceEngine.InstanceNode
          Deprecated.  
NetworkInferenceEngine.Partonomy
          Deprecated. M : Merelogy (partonomy), from activity instances to process instances, and between process instances.
 



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