public class GpadWriter extends Object
Constructor and Description |
---|
GpadWriter(PrintWriter pw,
double version) |
Modifier and Type | Method and Description |
---|---|
protected void |
end()
Called after the writing of a
GafDocument has been finished. |
protected void |
nl()
Append the separator between rows.
|
protected void |
print(String s)
Append an arbitrary string.
|
protected void |
sep()
Append a the separator between columns.
|
void |
write(GafDocument gdoc)
Write a full GAF.
|
void |
write(GeneAnnotation ann)
Write a single
GeneAnnotation . |
void |
writeHeader(GafDocument gdoc)
Write a header of a GAF, use the comments from the
GafDocument . |
void |
writeHeader(List<String> comments)
Write a header for a GAF, header comments are optional.
|
public GpadWriter(PrintWriter pw, double version)
pw
- version
- public void write(GafDocument gdoc)
gdoc
- public void writeHeader(GafDocument gdoc)
GafDocument
.gdoc
- public void writeHeader(List<String> comments)
comments
- public void write(GeneAnnotation ann)
GeneAnnotation
.ann
- protected void print(String s)
s
- protected void end()
GafDocument
has been finished.protected void sep()
protected void nl()
Copyright © 2010-2014. All Rights Reserved.