public interface EcoMapper
Modifier and Type | Field and Description |
---|---|
static String |
ECO_MAPPING_PURL
Permanent URL for the mapping of GO evidence codes to ECO classes
|
static String |
ECO_PURL
Permanent URL for the evidence code ontology (ECO) owl file.
|
static org.semanticweb.owlapi.model.IRI |
ECO_PURL_IRI
IRI for the evidence code ontology (ECO) owl file.
|
Modifier and Type | Method and Description |
---|---|
Set<org.semanticweb.owlapi.model.OWLClass> |
getAllEcoClassesForCode(String code)
Retrieve the ECO classes for the given GO evidence code.
|
Map<org.semanticweb.owlapi.model.OWLClass,String> |
getCodesForEcoClasses()
Retrieve the mapping from ECO classes to GO evidence codes.
|
org.semanticweb.owlapi.model.OWLClass |
getEcoClassForCode(String code)
Retrieve the equivalent ECO class for the given GO evidence code.
|
org.semanticweb.owlapi.model.OWLClass |
getEcoClassForCode(String code,
String refCode)
Retrieve the ECO class for the given GO evidence code and reference.
|
boolean |
isGoEvidenceCode(String code)
Check that the given GO code is a valid code with an existing mapping to ECO
|
static final String ECO_PURL
static final org.semanticweb.owlapi.model.IRI ECO_PURL_IRI
static final String ECO_MAPPING_PURL
org.semanticweb.owlapi.model.OWLClass getEcoClassForCode(String code)
code
- OWLClass
or nullSet<org.semanticweb.owlapi.model.OWLClass> getAllEcoClassesForCode(String code)
code
- org.semanticweb.owlapi.model.OWLClass getEcoClassForCode(String code, String refCode)
code
- refCode
- OWLClass
or nullboolean isGoEvidenceCode(String code)
code
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