public class GOReciprocalAnnotationRule extends AbstractAnnotationRule
Modifier and Type | Field and Description |
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static String |
PERMANENT_JAVA_ID
The string to identify this class in the annotation_qc.xml and related factories.
|
Constructor and Description |
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GOReciprocalAnnotationRule(OWLGraphWrapper graph,
TraversingEcoMapper eco) |
Modifier and Type | Method and Description |
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Set<AnnotationRuleViolation> |
getRuleViolations(GafDocument gafDoc)
Given a whole
GafDocument , find the set of violations using the rule |
Set<AnnotationRuleViolation> |
getRuleViolations(GeneAnnotation a)
Given an annotation, find the set of violations using the rule
|
boolean |
isAnnotationLevel() |
boolean |
isDocumentLevel() |
getDate, getDescription, getGrandFatheringDate, getName, getPredictedAnnotations, getRuleId, getRuleViolations, getStatus, hasGrandFathering, isInferringAnnotations, isOwlDocumentLevel, setDate, setDescription, setGrandFatheringDate, setName, setRuleId, setStatus
public static final String PERMANENT_JAVA_ID
public GOReciprocalAnnotationRule(OWLGraphWrapper graph, TraversingEcoMapper eco)
public Set<AnnotationRuleViolation> getRuleViolations(GeneAnnotation a)
AnnotationRule
getRuleViolations
in interface AnnotationRule
getRuleViolations
in class AbstractAnnotationRule
a
- annotationAnnotationRule.isAnnotationLevel()
public boolean isAnnotationLevel()
isAnnotationLevel
in interface AnnotationRule
isAnnotationLevel
in class AbstractAnnotationRule
GeneAnnotation
.AnnotationRule.getRuleViolations(GeneAnnotation)
public Set<AnnotationRuleViolation> getRuleViolations(GafDocument gafDoc)
AnnotationRule
GafDocument
, find the set of violations using the rulegetRuleViolations
in interface AnnotationRule
getRuleViolations
in class AbstractAnnotationRule
AnnotationRule.isDocumentLevel()
public boolean isDocumentLevel()
isDocumentLevel
in interface AnnotationRule
isDocumentLevel
in class AbstractAnnotationRule
AnnotationRule.getRuleViolations(GafDocument)
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