public class GoAnnotationRulesFactoryImpl extends AnnotationRulesFactoryImpl
status_df
Constructor and Description |
---|
GoAnnotationRulesFactoryImpl(OWLGraphWrapper graph,
TraversingEcoMapper eco,
boolean createOntologyModules) |
GoAnnotationRulesFactoryImpl(ParserWrapper parserWrapper,
boolean createOntologyModules) |
GoAnnotationRulesFactoryImpl(String qcfile,
String xrfabbslocation,
OWLGraphWrapper graph,
TraversingEcoMapper eco,
boolean createOntologyModules) |
GoAnnotationRulesFactoryImpl(String qcfile,
String xrfabbslocation,
ParserWrapper p,
List<String> ont,
String eco,
boolean createOntologyModules) |
GoAnnotationRulesFactoryImpl(String qcfile,
String xrfabbslocation,
ParserWrapper p,
String go,
String gorel,
String eco)
Deprecated.
|
Modifier and Type | Method and Description |
---|---|
protected AnnotationRule |
getClassForName(String className) |
protected void |
handleAdditionalRules(List<AnnotationRule> annotationRules,
List<AnnotationRule> documentRules,
List<AnnotationRule> owlRules,
List<AnnotationRule> inferenceRules,
List<AnnotationRule> experimentalInferenceRules) |
getExperimentalInferenceRules, getGafDocumentRules, getGeneAnnotationRules, getGraph, getInferenceRules, getOwlRules, init
public GoAnnotationRulesFactoryImpl(ParserWrapper parserWrapper, boolean createOntologyModules)
@Deprecated public GoAnnotationRulesFactoryImpl(String qcfile, String xrfabbslocation, ParserWrapper p, String go, String gorel, String eco)
public GoAnnotationRulesFactoryImpl(String qcfile, String xrfabbslocation, ParserWrapper p, List<String> ont, String eco, boolean createOntologyModules)
public GoAnnotationRulesFactoryImpl(OWLGraphWrapper graph, TraversingEcoMapper eco, boolean createOntologyModules)
public GoAnnotationRulesFactoryImpl(String qcfile, String xrfabbslocation, OWLGraphWrapper graph, TraversingEcoMapper eco, boolean createOntologyModules)
protected void handleAdditionalRules(List<AnnotationRule> annotationRules, List<AnnotationRule> documentRules, List<AnnotationRule> owlRules, List<AnnotationRule> inferenceRules, List<AnnotationRule> experimentalInferenceRules)
handleAdditionalRules
in class AnnotationRulesFactoryImpl
protected AnnotationRule getClassForName(String className) throws Exception
getClassForName
in class AnnotationRulesFactoryImpl
Exception
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