public class BasicChecksRule extends AbstractAnnotationRule
Modifier and Type | Field and Description |
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static ThreadLocal<SimpleDateFormat> |
dtFormat |
static String |
PERMANENT_JAVA_ID
The string to identify this class in the annotation_qc.xml and related factories.
|
Constructor and Description |
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BasicChecksRule(String xrefAbbsLocation,
TraversingEcoMapper eco) |
Modifier and Type | Method and Description |
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Set<AnnotationRuleViolation> |
getRuleViolations(GeneAnnotation a)
Given an annotation, find the set of violations using the rule
|
getDate, getDescription, getGrandFatheringDate, getName, getPredictedAnnotations, getRuleId, getRuleViolations, getRuleViolations, getStatus, hasGrandFathering, isAnnotationLevel, isDocumentLevel, isInferringAnnotations, isOwlDocumentLevel, setDate, setDescription, setGrandFatheringDate, setName, setRuleId, setStatus
public static final String PERMANENT_JAVA_ID
public static final ThreadLocal<SimpleDateFormat> dtFormat
public BasicChecksRule(String xrefAbbsLocation, TraversingEcoMapper eco)
xrefAbbsLocation
- eco
- public Set<AnnotationRuleViolation> getRuleViolations(GeneAnnotation a)
AnnotationRule
getRuleViolations
in interface AnnotationRule
getRuleViolations
in class AbstractAnnotationRule
a
- annotationAnnotationRule.isAnnotationLevel()
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