public interface AnnotationRulesFactory
Modifier and Type | Method and Description |
---|---|
List<AnnotationRule> |
getExperimentalInferenceRules()
Get the list of rules, which check for inferred annotations.
|
List<AnnotationRule> |
getGafDocumentRules()
Get the list of rules, which require a global view of the GAF (
GafDocument ). |
List<AnnotationRule> |
getGeneAnnotationRules()
Get the list of rules to be applied for each
GeneAnnotation |
OWLGraphWrapper |
getGraph()
Get the underlying ontology graph for this rule factory.
|
List<AnnotationRule> |
getInferenceRules()
Get the list of rules, which check for inferred annotations.
|
List<AnnotationRule> |
getOwlRules()
Get the list of rules, which require a global view of the GAF (
GafDocument ) and OWL. |
void |
init()
Initialize the factory.
|
void init()
List<AnnotationRule> getGeneAnnotationRules()
GeneAnnotation
List<AnnotationRule> getGafDocumentRules()
GafDocument
).List<AnnotationRule> getOwlRules()
GafDocument
) and OWL.List<AnnotationRule> getInferenceRules()
GafDocument
) and the OWL.List<AnnotationRule> getExperimentalInferenceRules()
GafDocument
) and the OWL.OWLGraphWrapper getGraph()
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