public class FoldBasedPredictor extends AbstractAnnotationPredictor implements AnnotationPredictor
Constructor and Description |
---|
FoldBasedPredictor(GafDocument gafDocument,
OWLGraphWrapper graph,
boolean throwExceptions) |
Modifier and Type | Method and Description |
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void |
dispose() |
protected Prediction |
getPrediction(GeneAnnotation ann,
org.semanticweb.owlapi.model.OWLClass c,
String bioentity,
String with) |
boolean |
init() |
boolean |
isInitialized() |
List<Prediction> |
predictForBioEntity(Bioentity e,
Collection<GeneAnnotation> anns) |
getAllPredictions, getGafDocument, getGraph, predict, setAndFilterRedundantPredictions, setAndFilterRedundantPredictions, setGafDocument, setGraph
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
getAllPredictions, predict
public FoldBasedPredictor(GafDocument gafDocument, OWLGraphWrapper graph, boolean throwExceptions)
public boolean isInitialized()
isInitialized
in interface AnnotationPredictor
public boolean init()
public List<Prediction> predictForBioEntity(Bioentity e, Collection<GeneAnnotation> anns)
predictForBioEntity
in interface AnnotationPredictor
protected Prediction getPrediction(GeneAnnotation ann, org.semanticweb.owlapi.model.OWLClass c, String bioentity, String with)
public void dispose()
dispose
in interface AnnotationPredictor
dispose
in class AbstractAnnotationPredictor
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