Package | Description |
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owltools.gaf.rules | |
owltools.gaf.rules.go |
Modifier and Type | Method and Description |
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AnnotationRuleViolation.ViolationType |
AnnotationRuleViolation.getType() |
static AnnotationRuleViolation.ViolationType |
AnnotationRuleViolation.ViolationType.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static AnnotationRuleViolation.ViolationType[] |
AnnotationRuleViolation.ViolationType.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
Modifier and Type | Method and Description |
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List<AnnotationRuleViolation.ViolationType> |
AnnotationRulesEngine.AnnotationRulesEngineResult.getTypes() |
Modifier and Type | Method and Description |
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int |
AnnotationRulesEngine.AnnotationRulesEngineResult.countViolations(AnnotationRuleViolation.ViolationType type) |
Map<String,List<AnnotationRuleViolation>> |
AnnotationRulesEngine.AnnotationRulesEngineResult.getViolations(AnnotationRuleViolation.ViolationType type)
Retrieve all violations for a given
AnnotationRuleViolation.ViolationType . |
boolean |
AnnotationRulesEngine.AnnotationRulesEngineResult.hasType(AnnotationRuleViolation.ViolationType type) |
void |
AnnotationRuleViolation.setType(AnnotationRuleViolation.ViolationType type) |
Constructor and Description |
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AnnotationRuleViolation(String ruleId,
String message,
GeneAnnotation sourceAnnotation,
AnnotationRuleViolation.ViolationType type)
Create a violation object with a message and a the corresponding source
annotation.
|
AnnotationRuleViolation(String ruleId,
String message,
String annotationRow,
AnnotationRuleViolation.ViolationType type)
Create a violation object with a message and a the corresponding
annotation row and
AnnotationRuleViolation.ViolationType . |
Constructor and Description |
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GoNoISSProteinBindingRule(TraversingEcoMapper eco,
AnnotationRuleViolation.ViolationType violationType) |
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