public class GeneAnnotation extends Object
Modifier and Type | Field and Description |
---|---|
static int |
COLOCATES_WITH_MASK |
static int |
CONTRIBUTES_TO_MASK |
static int |
CUT_MASK |
static ThreadLocal<DateFormat> |
GAF_Date_Format
Provide a thread-safe formatter for a GAF date.
|
static int |
INTEGRAL_TO_MASK |
static int |
NOT_MASK |
Constructor and Description |
---|
GeneAnnotation() |
GeneAnnotation(GeneAnnotation ann) |
public static final ThreadLocal<DateFormat> GAF_Date_Format
public static final int CONTRIBUTES_TO_MASK
public static final int COLOCATES_WITH_MASK
public static final int INTEGRAL_TO_MASK
public static final int NOT_MASK
public static final int CUT_MASK
public GeneAnnotation()
public GeneAnnotation(GeneAnnotation ann)
public String getBioentity()
public void setBioentity(String bioentity)
public String getRelation()
public void setRelation(String relation)
public String getCls()
public void setCls(String cls)
public void addReferenceId(String referenceId)
public void addReferenceIds(Collection<String> referenceIds)
public String getEcoEvidenceCls()
public String getShortEvidence()
public void setAspect(String inAspect)
public String getAspect()
public void setActsOnTaxonId(String actsOnTaxonId)
public void setActsOnTaxonId(org.apache.commons.lang3.tuple.Pair<String,String> taxonRelPair)
public String getLastUpdateDate()
public void setLastUpdateDate(Date date)
public void setLastUpdateDate(String lastUpdateDate)
public String getAssignedBy()
public void setAssignedBy(String assignedBy)
public List<List<ExtensionExpression>> getExtensionExpressions()
public void setExtensionExpressions(List<List<ExtensionExpression>> expressions)
public String getGeneProductForm()
public void setGeneProductForm(String geneProductForm)
public Bioentity getBioentityObject()
public void setBioentityObject(Bioentity bioentityObject)
public boolean isContributesTo()
public void setIsContributesTo(boolean isContributesTo)
public boolean isColocatesWith()
public void setIsColocatesWith(boolean isColocatesWith)
public boolean isIntegralTo()
public void setIsIntegralTo(boolean isIntegralTo)
public void setIsNegated(boolean isNegated)
public boolean isNegated()
public void setIsCut(boolean isCut)
public boolean isCut()
public void setWithInfos(Collection<String> withInfoList)
public Collection<String> getWithInfos()
public AnnotationSource getSource()
public void setSource(AnnotationSource annotationSource)
public boolean hasQualifiers()
public void setQualifiers(int qualifiers)
public boolean isMRC()
public void setDirectMRC(boolean is_MRC)
public boolean isDirectNot()
public void setDirectNot(boolean isDirectNot)
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