public class GoMySQLDatabaseDumper extends DatabaseDumper
Modifier and Type | Class and Description |
---|---|
protected static class |
GoMySQLDatabaseDumper.GOMySQLTable |
incrementallyLoadedTables, isStrict, objLastIdMap, tableObjIdMap
gafdocs, graph, problems, targetDirectory
Constructor and Description |
---|
GoMySQLDatabaseDumper(OWLGraphWrapper g) |
Modifier and Type | Method and Description |
---|---|
void |
dump()
dumps all tables
|
void |
dumpAssociationModule() |
void |
dumpAssociationRowsForGaf(PrintStream s,
GafDocument gafdoc) |
void |
dumpAssociationTable() |
void |
dumpDbxrefTable() |
void |
dumpGeneProductRowsForGaf(PrintStream s,
GafDocument gafdoc) |
void |
dumpGraphModule() |
void |
dumpGraphPathTable() |
void |
dumpMetaModule() |
void |
dumpOptModule() |
void |
dumpSpeciesRow(PrintStream s,
String taxId) |
void |
dumpSpeciesTable() |
void |
dumpTerm2TermTable() |
void |
dumpTermSubsetTable() |
void |
dumpTermTable() |
cleanup, closeAllPrintStreams, closePrintStream, dumpRow, getId, getId, getPrintStream, getPrintStream, showStats
addGafDocument, addProblem, getGafdocs, getTargetDirectory, reportProblems, setGafdocs, setTargetDirectory
public GoMySQLDatabaseDumper(OWLGraphWrapper g)
g
- public void dump() throws IOException, ReferentialIntegrityException
dump
in class Dumper
IOException
ReferentialIntegrityException
public void dumpGraphModule() throws IOException, ReferentialIntegrityException
public void dumpTermTable() throws IOException, ReferentialIntegrityException
public void dumpTermSubsetTable() throws IOException, ReferentialIntegrityException
public void dumpTerm2TermTable() throws IOException, ReferentialIntegrityException
public void dumpMetaModule() throws IOException, ReferentialIntegrityException
public void dumpDbxrefTable() throws IOException, ReferentialIntegrityException
public void dumpOptModule() throws IOException, ReferentialIntegrityException
public void dumpGraphPathTable() throws IOException, ReferentialIntegrityException
public void dumpAssociationModule() throws IOException, ReferentialIntegrityException
public void dumpSpeciesTable() throws IOException, ReferentialIntegrityException
public void dumpSpeciesRow(PrintStream s, String taxId) throws IOException, ReferentialIntegrityException
public void dumpAssociationTable() throws IOException, ReferentialIntegrityException
public void dumpAssociationRowsForGaf(PrintStream s, GafDocument gafdoc) throws IOException, ReferentialIntegrityException
public void dumpGeneProductRowsForGaf(PrintStream s, GafDocument gafdoc) throws IOException, ReferentialIntegrityException
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