public class Bioentity extends Object
Constructor and Description |
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Bioentity() |
Bioentity(String id,
String symbol,
String fullName,
String typeCls,
String ncbiTaxonId,
String db) |
public String getLocalId()
public String getId()
public void setId(String id)
public String getSymbol()
public void setSymbol(String label)
public String getFullName()
public void setFullName(String fullName)
public String getTypeCls()
public void setTypeCls(String typeCls)
public String getNcbiTaxonId()
public void setNcbiTaxonId(String ncbiTaxonId)
public String getDb()
public String getDBID()
public void setDb(String db)
public void addSynonym(String synonym)
public String getGeneId()
public void setGeneId(String geneObjectId)
public void addDbXref(String dbXref)
public String getSeqId()
public String getSeqDb()
public String getPersistantNodeID()
public void setParent(Bioentity parent)
public Bioentity getParent()
public boolean isLeaf()
public boolean isTerminus()
public boolean isPruned()
public void setPrune(boolean prune)
public void setDistanceFromParent(float dist)
public float getDistanceFromParent()
public void setDistanceFromRoot(float dist)
public float getDistanceFromRoot()
public void setType(String s)
public String getType()
public boolean isDuplication()
public boolean isHorizontalTransfer()
public String getPaintId()
public void setPaintId(String an_number)
public String getSpeciesLabel()
public void addSpeciesLabel(String species)
public List<GeneAnnotation> getAnnotations()
public void setAnnotations(List<GeneAnnotation> annotations)
public void addAnnotation(GeneAnnotation assoc)
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