JavaScript is disabled on your browser.
Overview
Package
Class
Use
Tree
Deprecated
Index
Help
Prev
Next
Frames
No Frames
All Classes
Hierarchy For All Packages
Package Hierarchies:
owltools.gaf
,
owltools.gaf.bioentities
,
owltools.gaf.closure
,
owltools.gaf.eco
,
owltools.gaf.godb
,
owltools.gaf.inference
,
owltools.gaf.io
,
owltools.gaf.metadata
,
owltools.gaf.owl
,
owltools.gaf.owl.mapping
,
owltools.gaf.parser
,
owltools.gaf.rules
,
owltools.gaf.rules.go
,
owltools.gaf.species
Class Hierarchy
java.lang.
Object
owltools.gaf.inference.
AbstractAnnotationPredictor
(implements owltools.gaf.inference.
AnnotationPredictor
)
owltools.gaf.inference.
BasicAnnotationPropagator
(implements owltools.gaf.inference.
AnnotationPredictor
)
owltools.gaf.inference.
CompositionalClassPredictor
(implements owltools.gaf.inference.
AnnotationPredictor
)
owltools.gaf.inference.
FoldBasedPredictor
(implements owltools.gaf.inference.
AnnotationPredictor
)
owltools.gaf.rules.
AbstractAnnotationRule
(implements owltools.gaf.rules.
AnnotationRule
)
owltools.gaf.rules.
AnnotationRegularExpressionFromXMLRule
owltools.gaf.rules.
AnnotationTaxonRule
owltools.gaf.rules.go.
GoAnnotationTaxonRule
owltools.gaf.rules.go.
BasicChecksRule
owltools.gaf.rules.
GenericReasonerValidationCheck
owltools.gaf.rules.go.
GoAnnotationExperimentalPredictionRule
owltools.gaf.rules.go.
GoAnnotationPredictionRule
owltools.gaf.rules.go.
GoBindingCheckWithFieldRule
owltools.gaf.rules.go.
GoClassReferenceAnnotationRule
owltools.gaf.rules.go.
GoICAnnotationRule
owltools.gaf.rules.go.
GoIDAAnnotationRule
owltools.gaf.rules.go.
GoIEPRestrictionsRule
owltools.gaf.rules.go.
GoIPIAnnotationRule
owltools.gaf.rules.go.
GoIPICatalyticActivityRestrictionsRule
owltools.gaf.rules.go.
GoMultipleTaxonRule
owltools.gaf.rules.go.
GoNDAnnotationRule
owltools.gaf.rules.go.
GoNoHighLevelTermAnnotationRule
owltools.gaf.rules.go.
GoNoISSProteinBindingRule
owltools.gaf.rules.go.
GOReciprocalAnnotationRule
owltools.gaf.io.
AbstractGafWriter
owltools.gaf.io.
GafWriter
(implements java.io.
Closeable
)
owltools.gaf.io.
GafWriter.BufferedGafWriter
owltools.gaf.io.
AbstractXmlWriter
owltools.gaf.io.
PseudoRdfXmlWriter
owltools.gaf.io.
XgmmlWriter
owltools.gaf.metadata.
AnnotationDocumentMetadata
owltools.gaf.rules.
AnnotationRulesEngine
owltools.gaf.rules.
AnnotationRulesEngine.AnnotationRulesEngineResult
owltools.gaf.rules.
AnnotationRulesFactoryImpl
(implements owltools.gaf.rules.
AnnotationRulesFactory
)
owltools.gaf.rules.go.
GoAnnotationRulesFactoryImpl
owltools.gaf.rules.
AnnotationRulesReportWriter
(implements java.io.
Closeable
)
owltools.gaf.rules.
AnnotationRuleViolation
owltools.gaf.
AnnotationSource
owltools.gaf.
Bioentity
owltools.gaf.
BioentityDocument
owltools.gaf.parser.
BuilderTools
owltools.gaf.inference.
ClassTaxonMatrix
owltools.gaf.closure.
ClosureTool
owltools.gaf.parser.
DefaultAspectProvider
(implements owltools.gaf.parser.
GpadGpiObjectsBuilder.AspectProvider
)
owltools.gaf.godb.
Dumper
owltools.gaf.godb.
DatabaseDumper
owltools.gaf.godb.
GoMySQLDatabaseDumper
owltools.gaf.eco.
EcoMapperFactory
owltools.gaf.eco.
EcoMapperFactory.OntologyMapperPair
<MAPPER>
owltools.gaf.eco.
EcoMapperImpl
(implements owltools.gaf.eco.
EcoMapper
)
owltools.gaf.eco.
TraversingEcoMapperImpl
(implements owltools.gaf.eco.
TraversingEcoMapper
)
owltools.gaf.
EcoTools
owltools.gaf.
ExtensionExpression
owltools.gaf.
GafDocument
owltools.gaf.parser.
GafObjectsBuilder
owltools.gaf.owl.
GAFOWLBridge
owltools.gaf.owl.
AnnotationExtensionFolder
owltools.gaf.owl.
AnnotationExtensionUnfolder
owltools.gaf.owl.mapping.
BasicABox
owltools.gaf.owl.
GAFOWLBridge.GAFDescription
owltools.gaf.parser.
GAFParser
owltools.gaf.
GeneAnnotation
owltools.gaf.parser.
GpadGpiObjectsBuilder
owltools.gaf.parser.
GpadParser
owltools.gaf.io.
GpadWriter
owltools.gaf.parser.
GpiParser
owltools.gaf.io.
GpiWriter
owltools.gaf.
IdMapping
owltools.gaf.parser.
IssueListener.DefaultIssueListener
(implements owltools.gaf.parser.
IssueListener
)
owltools.gaf.io.
OpenAnnotationRDFWriter
owltools.gaf.inference.
Prediction
owltools.gaf.bioentities.
ProteinTools
owltools.gaf.bioentities.
QuestForOrthologsSeqXMLParser
owltools.gaf.io.
ResourceLoader
owltools.gaf.owl.
SimpleABoxToGAF
owltools.gaf.eco.
SimpleEcoMapperImpl
(implements owltools.gaf.eco.
SimpleEcoMapper
)
owltools.gaf.species.
Species
owltools.gaf.inference.
TaxonConstraintsEngine
owltools.gaf.species.
TaxonFinder
owltools.gaf.
TaxonTools
java.lang.
Throwable
(implements java.io.
Serializable
)
java.lang.
Exception
owltools.gaf.rules.
AnnotationRulesEngine.AnnotationRuleCheckException
owltools.gaf.godb.
ReferentialIntegrityException
Interface Hierarchy
owltools.gaf.inference.
AnnotationPredictor
owltools.gaf.rules.
AnnotationRule
owltools.gaf.rules.
AnnotationRulesFactory
owltools.gaf.parser.
CommentListener
owltools.gaf.eco.
EcoMapper
owltools.gaf.eco.
TraversingEcoMapper
owltools.gaf.parser.
GpadGpiObjectsBuilder.AspectProvider
owltools.gaf.parser.
IssueListener
owltools.gaf.parser.
LineFilter
<T>
owltools.gaf.parser.
ParserListener
owltools.gaf.io.
PseudoRdfXmlWriter.ProgressReporter
owltools.gaf.bioentities.
QuestForOrthologsSeqXMLParser.MoreInfoProteinListener
owltools.gaf.bioentities.
QuestForOrthologsSeqXMLParser.MoreInfoProteinListener.MoreInfo
owltools.gaf.bioentities.
QuestForOrthologsSeqXMLParser.ProteinListener
owltools.gaf.eco.
SimpleEcoMapper
Enum Hierarchy
java.lang.
Object
java.lang.
Enum
<E> (implements java.lang.
Comparable
<T>, java.io.
Serializable
)
owltools.gaf.godb.
GoMySQLDatabaseDumper.GOMySQLTable
owltools.gaf.owl.
GAFOWLBridge.BioentityMapping
owltools.gaf.owl.
GAFOWLBridge.Vocab
owltools.gaf.rules.
AnnotationRuleViolation.ViolationType
Overview
Package
Class
Use
Tree
Deprecated
Index
Help
Prev
Next
Frames
No Frames
All Classes
Copyright © 2010–2015. All rights reserved.