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Packages that use Pheno | |
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owltools.phenolog | Phenolog - Calculation of class similarity based on instance data |
Uses of Pheno in owltools.phenolog |
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Methods in owltools.phenolog that return Pheno | |
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static Pheno |
Main.calculate_overlap(Pheno p1,
Pheno p2,
HashMap<String,IndividualPair> hm)
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Pheno |
Pheno.getClosest()
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Methods in owltools.phenolog that return types with arguments of type Pheno | |
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HashSet<Pheno> |
Pheno.getancestors()
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HashMap<String,Pheno> |
PhenoTransitiveClosure.gethmp()
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HashSet<Pheno> |
PhenoTransitiveClosure.gethsp()
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HashSet<Pheno> |
PhenoTransitiveClosure.performtransiviteclosure()
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HashSet<Pheno> |
PhenoTransitiveClosure.performtransiviteclosure(String obolink,
String prefix,
HashSet<Pheno> hsp,
HashMap<String,Pheno> hmp,
HashMap<String,IndividualPair> hmpair)
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Methods in owltools.phenolog with parameters of type Pheno | |
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static Pheno |
Main.calculate_overlap(Pheno p1,
Pheno p2,
HashMap<String,IndividualPair> hm)
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int |
Pheno.compareTo(Pheno p)
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void |
Pheno.setClosest(Pheno closest)
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Method parameters in owltools.phenolog with type arguments of type Pheno | |
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HashSet<Pheno> |
PhenoTransitiveClosure.performtransiviteclosure(String obolink,
String prefix,
HashSet<Pheno> hsp,
HashMap<String,Pheno> hmp,
HashMap<String,IndividualPair> hmpair)
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HashSet<Pheno> |
PhenoTransitiveClosure.performtransiviteclosure(String obolink,
String prefix,
HashSet<Pheno> hsp,
HashMap<String,Pheno> hmp,
HashMap<String,IndividualPair> hmpair)
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static void |
Main.printresults(String fname,
ArrayList<Pheno> rs_list,
double cutoff,
int flip)
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void |
Pheno.setancestors(HashSet<Pheno> ancestors)
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void |
PhenoTransitiveClosure.sethmp(HashMap<String,Pheno> hmp)
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void |
PhenoTransitiveClosure.sethsp(HashSet<Pheno> hsp)
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