Package owltools.io

IO - Input/Output

See:
          Description

Interface Summary
GraphReader  
GraphRenderer  
 

Class Summary
AbstractClosureReader  
AbstractClosureRenderer Renders the graph closure - i.e.
CatalogXmlIRIMapper OWLOntologyIRIMapper using the mappings from a catalog.xml file.
ChadoGraphClosureRenderer implements a graph closure writer suitable for imports into Chado; in particular: (i) all identifiers are translated to OBO IDs (ii) relationship chains of length > 1 are ignored (iii) SUBCLASS is written as is_a, and only existential restrictions are emitted
CompactGraphClosureReader Note that the ontology must be loaded prior to restored a closure table
CompactGraphClosureRenderer Similar to GraphClosureRenderer, writes in a more compact format
GraphClosureRenderer  
OWLGsonRenderer  
OWLPrettyPrinter  
ParserWrapper Convenience class wrapping org.oboformat that abstracts away underlying details of ontology format or location
TableToAxiomConverter reads in a table (e.g.
 

Package owltools.io Description

IO - Input/Output

lightweight wrapper that abstracts away from whether source ontology is obo format or owl



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