Uses of Class
owltools.phenolog.Pheno

Packages that use Pheno
owltools.phenolog Phenolog - Calculation of class similarity based on instance data 
 

Uses of Pheno in owltools.phenolog
 

Methods in owltools.phenolog that return Pheno
static Pheno Main.calculate_overlap(Pheno p1, Pheno p2, HashMap<String,IndividualPair> hm)
           
 Pheno Pheno.getClosest()
           
 

Methods in owltools.phenolog that return types with arguments of type Pheno
 HashSet<Pheno> Pheno.getancestors()
           
 HashMap<String,Pheno> PhenoTransitiveClosure.gethmp()
           
 HashSet<Pheno> PhenoTransitiveClosure.gethsp()
           
 HashSet<Pheno> PhenoTransitiveClosure.performtransiviteclosure()
           
 HashSet<Pheno> PhenoTransitiveClosure.performtransiviteclosure(String obolink, String prefix, HashSet<Pheno> hsp, HashMap<String,Pheno> hmp, HashMap<String,IndividualPair> hmpair)
           
 

Methods in owltools.phenolog with parameters of type Pheno
static Pheno Main.calculate_overlap(Pheno p1, Pheno p2, HashMap<String,IndividualPair> hm)
           
 int Pheno.compareTo(Pheno p)
           
 void Pheno.setClosest(Pheno closest)
           
 

Method parameters in owltools.phenolog with type arguments of type Pheno
 HashSet<Pheno> PhenoTransitiveClosure.performtransiviteclosure(String obolink, String prefix, HashSet<Pheno> hsp, HashMap<String,Pheno> hmp, HashMap<String,IndividualPair> hmpair)
           
 HashSet<Pheno> PhenoTransitiveClosure.performtransiviteclosure(String obolink, String prefix, HashSet<Pheno> hsp, HashMap<String,Pheno> hmp, HashMap<String,IndividualPair> hmpair)
           
static void Main.printresults(String fname, ArrayList<Pheno> rs_list, double cutoff, int flip)
           
 void Pheno.setancestors(HashSet<Pheno> ancestors)
           
 void PhenoTransitiveClosure.sethmp(HashMap<String,Pheno> hmp)
           
 void PhenoTransitiveClosure.sethsp(HashSet<Pheno> hsp)
           
 



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