All Classes

AbstractClosureReader AbstractClosureRenderer AbstractMappingParser AsymmetricJaccardSimilarity Attribute AvgInformationContentBestMatchesSimilarity AvgInformationContentLCSSimilarity BloomFilter CatalogXmlIRIMapper ChadoGraphClosureRenderer CombinedJaccardConjunctiveSetSimilarity CombinedSimilarity CombinedSimilarity2 CompactGraphClosureReader CompactGraphClosureRenderer ConjunctiveSetInformationContentRatioSimilarity ConjunctiveSetSimilarity DescriptionTreeSimilarity DisjunctiveSetSimilarity DLQueryTool ExpressionMaterializingReasoner GenePheno GenePhenoTsvParser GraphClosureRenderer GraphicsConfig GraphReader GraphReasoner GraphReasonerFactory GraphRenderer GraphStyle HierarchyImage IDMapHandler IDMapPairWriter IDMappingPIRParser IDMappingPIRParser.Types ImageRender Individual IndividualPair InferenceBuilder InferenceBuilder.FactoryDetails JaccardBloomSimilarity JaccardSimilarity Main MaximumInformationContentSimilarity Mooncat MultiSimilarity OntologyMetaDataTools OntologyMetaDataTools.AnnotationCardinalityConfictHandler OntologyMetaDataTools.AnnotationCardinalityException OverlapSimilarity OWLExtendedReasoner OWLGraphEdge OWLGraphLayoutNode OWLGraphLayoutRenderer OWLGraphStrokeEdge OWLGraphStrokeEdge.SVGEdge OWLGraphUtil OWLGraphvizRenderer OWLGraphWrapper OWLGraphWrapper.ISynonym OWLGraphWrapper.Synonym OWLGsonRenderer OWLObjectPair OWLPrettyPrinter OWLQuantifiedProperty OWLQuantifiedProperty.Quantifier OWLReasonerRunner ParserWrapper Pheno PhenologEngine PhenoTransitiveClosure PlaceholderJcelFactory Profiler PropertyViewOntologyBuilder QuerySubsetGenerator RelationType RelationType.Polarity Reporter SharedLabelException SimEngine Similarity SimilarityCalculator SimSearch TableToAxiomConverter UniProtIDMapParser