owltools.sim
Class MaximumInformationContentSimilarity
java.lang.Object
owltools.sim.Similarity
owltools.sim.MaximumInformationContentSimilarity
public class MaximumInformationContentSimilarity
- extends Similarity
MaximumInformationContentSimilarity(a,b) = max { IC(LCA_1(a,b)) ... IC(LCA_n(a,b)) }
E.g. for GO model, this would check all named LCAs (i.e. GO terms) and use the one with the highest IC
- Author:
- cjm
Methods inherited from class owltools.sim.Similarity |
addResultsToOWLOntology, annotationIRI, createOWLOntologyFromResults, getScore, isAboveMinScore, print, print, print, printDescription, printDescription, report, setScore, setScore, splitIRI, translateResultsToOWLAxioms |
bestSubsumers
public Set<org.semanticweb.owlapi.model.OWLObject> bestSubsumers
MaximumInformationContentSimilarity
public MaximumInformationContentSimilarity()
toString
public String toString()
- Overrides:
toString
in class Similarity
calculate
public void calculate(SimEngine simEngine,
org.semanticweb.owlapi.model.OWLObject a,
org.semanticweb.owlapi.model.OWLObject b)
- Specified by:
calculate
in class Similarity
translateResultsToOWLAxioms
protected void translateResultsToOWLAxioms(String id,
org.semanticweb.owlapi.model.OWLNamedIndividual result,
Set<org.semanticweb.owlapi.model.OWLAxiom> axioms)
- Specified by:
translateResultsToOWLAxioms
in class Similarity
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