Package owltools.io

IO - Input/Output

See:
          Description

Interface Summary
GraphReader  
GraphRenderer  
 

Class Summary
AbstractClosureReader  
AbstractClosureRenderer Renders the graph closure - i.e.
CatalogXmlIRIMapper OWLOntologyIRIMapper using the mappings from a catalog.xml file.
ChadoGraphClosureRenderer implements a graph closure writer suitable for imports into Chado; in particular: (i) all identifiers are translated to OBO IDs (ii) relationship chains of length > 1 are ignored (iii) SUBCLASS is written as is_a, and only existential restrictions are emitted
ClassExpressionGraphClosureRenderer Writes graph closure as class expressions
CompactGraphClosureReader Note that the ontology must be loaded prior to restored a closure table
CompactGraphClosureRenderer Similar to GraphClosureRenderer, writes in a more compact format
GraphClosureRenderer  
ImportClosureSlurper  
OWLGsonRenderer  
OWLPrettyPrinter  
ParserWrapper Convenience class wrapping org.oboformat that abstracts away underlying details of ontology format or location
ParserWrapper.OWLGraphWrapperNameProvider Provide names for the OBOFormatWriter using an OWLGraphWrapper.
TableToAxiomConverter reads in a table (e.g.
 

Package owltools.io Description

IO - Input/Output

lightweight wrapper that abstracts away from whether source ontology is obo format or owl



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