All Classes

AbstractClosureReader AbstractClosureRenderer AbstractMappingParser AsymmetricJaccardSimilarity Attribute AvgInformationContentBestMatchesSimilarity AvgInformationContentLCSSimilarity BloomFilter CatalogXmlIRIMapper ChadoGraphClosureRenderer ClassExpressionGraphClosureRenderer CombinedJaccardConjunctiveSetSimilarity CombinedSimilarity CombinedSimilarity2 CompactGraphClosureReader CompactGraphClosureRenderer ConjunctiveSetInformationContentRatioSimilarity ConjunctiveSetSimilarity DescriptionTreeSimilarity DisjunctiveSetSimilarity DLQueryTool ExpressionMaterializingReasoner GenePheno GenePhenoTsvParser GraphClosureRenderer GraphicsConfig GraphReader GraphReasoner GraphReasonerFactory GraphRenderer GraphStyle HierarchyImage IDMapHandler IDMapPairWriter IDMappingPIRParser IDMappingPIRParser.Types ImageRender ImportClosureSlurper Individual IndividualPair InferenceBuilder InferenceBuilder.FactoryDetails JaccardBloomSimilarity JaccardSimilarity Main MaximumInformationContentSimilarity Mooncat MultiSimilarity OntologyMetaDataTools OntologyMetaDataTools.AnnotationCardinalityConfictHandler OntologyMetaDataTools.AnnotationCardinalityException OverlapSimilarity OWLExtendedReasoner OWLGraphEdge OWLGraphLayoutNode OWLGraphLayoutRenderer OWLGraphStrokeEdge OWLGraphStrokeEdge.SVGEdge OWLGraphUtil OWLGraphvizRenderer OWLGraphWrapper OWLGraphWrapper.ISynonym OWLGraphWrapper.Synonym OWLGsonRenderer OWLObjectPair OWLPrettyPrinter OWLQuantifiedProperty OWLQuantifiedProperty.Quantifier OWLReasonerRunner OWLShuntEdge OWLShuntGraph OWLShuntNode ParserWrapper ParserWrapper.OWLGraphWrapperNameProvider Pheno PhenologEngine PhenoTransitiveClosure PlaceholderJcelFactory Profiler PropertyViewOntologyBuilder QuerySubsetGenerator ReasonerDiff RelationType RelationType.Polarity Reporter ResonerDiffCommandLine SharedLabelException SimEngine Similarity SimilarityCalculator SimSearch TableToAxiomConverter TBoxUnFoldingTool TBoxUnFoldingTool.NonDeterministicUnfoldException UniProtIDMapParser