Package | Description |
---|---|
owltools.phenolog |
Phenolog - Calculation of class similarity based on instance data
|
Modifier and Type | Method and Description |
---|---|
static Pheno |
Main.calculate_overlap(Pheno p1,
Pheno p2,
HashMap<String,IndividualPair> hm) |
Pheno |
Pheno.getClosest() |
Modifier and Type | Method and Description |
---|---|
HashSet<Pheno> |
Pheno.getancestors() |
HashMap<String,Pheno> |
PhenoTransitiveClosure.gethmp() |
HashSet<Pheno> |
PhenoTransitiveClosure.gethsp() |
HashSet<Pheno> |
PhenoTransitiveClosure.performtransiviteclosure() |
HashSet<Pheno> |
PhenoTransitiveClosure.performtransiviteclosure(String obolink,
String prefix,
HashSet<Pheno> hsp,
HashMap<String,Pheno> hmp,
HashMap<String,IndividualPair> hmpair) |
Modifier and Type | Method and Description |
---|---|
static Pheno |
Main.calculate_overlap(Pheno p1,
Pheno p2,
HashMap<String,IndividualPair> hm) |
int |
Pheno.compareTo(Pheno p) |
void |
Pheno.setClosest(Pheno closest) |
Modifier and Type | Method and Description |
---|---|
HashSet<Pheno> |
PhenoTransitiveClosure.performtransiviteclosure(String obolink,
String prefix,
HashSet<Pheno> hsp,
HashMap<String,Pheno> hmp,
HashMap<String,IndividualPair> hmpair) |
HashSet<Pheno> |
PhenoTransitiveClosure.performtransiviteclosure(String obolink,
String prefix,
HashSet<Pheno> hsp,
HashMap<String,Pheno> hmp,
HashMap<String,IndividualPair> hmpair) |
static void |
Main.printresults(String fname,
ArrayList<Pheno> rs_list,
double cutoff,
int flip) |
void |
Pheno.setancestors(HashSet<Pheno> ancestors) |
void |
PhenoTransitiveClosure.sethmp(HashMap<String,Pheno> hmp) |
void |
PhenoTransitiveClosure.sethsp(HashSet<Pheno> hsp) |
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