public class ParserWrapper extends Object
Modifier and Type | Class and Description |
---|---|
static class |
ParserWrapper.OboAndOwlNameProvider
|
static class |
ParserWrapper.OWLGraphWrapperNameProvider
Provide names for the
OBOFormatWriter using an
OWLGraphWrapper . |
Constructor and Description |
---|
ParserWrapper() |
Modifier and Type | Method and Description |
---|---|
void |
addIRIMapper(org.semanticweb.owlapi.model.OWLOntologyIRIMapper mapper) |
void |
addIRIMappers(List<org.semanticweb.owlapi.model.OWLOntologyIRIMapper> mappers) |
List<org.semanticweb.owlapi.model.OWLOntologyIRIMapper> |
getIRIMappers() |
org.semanticweb.owlapi.model.OWLOntologyManager |
getManager() |
org.obolibrary.oboformat.model.OBODoc |
getOBOdoc() |
boolean |
isCheckOboDoc() |
org.semanticweb.owlapi.model.OWLOntology |
parse(String iriString) |
org.semanticweb.owlapi.model.OWLOntology |
parseOBO(String source) |
org.semanticweb.owlapi.model.OWLOntology |
parseOWL(org.semanticweb.owlapi.model.IRI iri) |
org.semanticweb.owlapi.model.OWLOntology |
parseOWL(String iriString) |
OWLGraphWrapper |
parseToOWLGraph(String iriString) |
OWLGraphWrapper |
parseToOWLGraph(String iriString,
boolean isMergeImportClosure) |
void |
removeIRIMapper(org.semanticweb.owlapi.model.OWLOntologyIRIMapper mapper) |
void |
saveOWL(org.semanticweb.owlapi.model.OWLOntology ont,
org.semanticweb.owlapi.model.OWLDocumentFormat owlFormat,
OutputStream outputStream) |
void |
saveOWL(org.semanticweb.owlapi.model.OWLOntology ont,
org.semanticweb.owlapi.model.OWLDocumentFormat owlFormat,
String file) |
void |
saveOWL(org.semanticweb.owlapi.model.OWLOntology ont,
String file) |
void |
setCheckOboDoc(boolean isCheckOboDoc) |
void |
setManager(org.semanticweb.owlapi.model.OWLOntologyManager manager) |
public org.semanticweb.owlapi.model.OWLOntologyManager getManager()
public void setManager(org.semanticweb.owlapi.model.OWLOntologyManager manager)
public boolean isCheckOboDoc()
public void setCheckOboDoc(boolean isCheckOboDoc)
public void addIRIMapper(org.semanticweb.owlapi.model.OWLOntologyIRIMapper mapper)
public void removeIRIMapper(org.semanticweb.owlapi.model.OWLOntologyIRIMapper mapper)
public List<org.semanticweb.owlapi.model.OWLOntologyIRIMapper> getIRIMappers()
public void addIRIMappers(List<org.semanticweb.owlapi.model.OWLOntologyIRIMapper> mappers)
public OWLGraphWrapper parseToOWLGraph(String iriString) throws org.semanticweb.owlapi.model.OWLOntologyCreationException, IOException
org.semanticweb.owlapi.model.OWLOntologyCreationException
IOException
public OWLGraphWrapper parseToOWLGraph(String iriString, boolean isMergeImportClosure) throws org.semanticweb.owlapi.model.OWLOntologyCreationException, IOException
org.semanticweb.owlapi.model.OWLOntologyCreationException
IOException
public org.semanticweb.owlapi.model.OWLOntology parse(String iriString) throws org.semanticweb.owlapi.model.OWLOntologyCreationException, IOException
org.semanticweb.owlapi.model.OWLOntologyCreationException
IOException
public org.semanticweb.owlapi.model.OWLOntology parseOBO(String source) throws IOException, org.semanticweb.owlapi.model.OWLOntologyCreationException
IOException
org.semanticweb.owlapi.model.OWLOntologyCreationException
public org.semanticweb.owlapi.model.OWLOntology parseOWL(String iriString) throws org.semanticweb.owlapi.model.OWLOntologyCreationException
org.semanticweb.owlapi.model.OWLOntologyCreationException
public org.semanticweb.owlapi.model.OWLOntology parseOWL(org.semanticweb.owlapi.model.IRI iri) throws org.semanticweb.owlapi.model.OWLOntologyCreationException
org.semanticweb.owlapi.model.OWLOntologyCreationException
public void saveOWL(org.semanticweb.owlapi.model.OWLOntology ont, String file) throws org.semanticweb.owlapi.model.OWLOntologyStorageException
org.semanticweb.owlapi.model.OWLOntologyStorageException
public void saveOWL(org.semanticweb.owlapi.model.OWLOntology ont, org.semanticweb.owlapi.model.OWLDocumentFormat owlFormat, String file) throws org.semanticweb.owlapi.model.OWLOntologyStorageException
org.semanticweb.owlapi.model.OWLOntologyStorageException
public void saveOWL(org.semanticweb.owlapi.model.OWLOntology ont, org.semanticweb.owlapi.model.OWLDocumentFormat owlFormat, OutputStream outputStream) throws org.semanticweb.owlapi.model.OWLOntologyStorageException
org.semanticweb.owlapi.model.OWLOntologyStorageException
public org.obolibrary.oboformat.model.OBODoc getOBOdoc()
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