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Hierarchy For All Packages
Package Hierarchies:
owltools
,
owltools.cli
,
owltools.diff
,
owltools.frame
,
owltools.frame.jsonld
,
owltools.gfx
,
owltools.graph
,
owltools.graph.shunt
,
owltools.idmap
,
owltools.io
,
owltools.mooncat
,
owltools.mooncat.ontologymetadata
,
owltools.phenolog
,
owltools.profile
,
owltools.reasoner
,
owltools.tr
,
owltools.util
,
owltools.version
,
owltools.vocab
Class Hierarchy
java.lang.
Object
owltools.io.
AbstractClosureReader
(implements owltools.io.
GraphReader
)
owltools.io.
CompactGraphClosureReader
java.util.
AbstractCollection
<E> (implements java.util.
Collection
<E>)
java.util.
AbstractSet
<E> (implements java.util.
Set
<E>)
java.util.
HashSet
<E> (implements java.lang.
Cloneable
, java.io.
Serializable
, java.util.
Set
<E>)
owltools.graph.
OWLGraphEdge.OWLGraphEdgeSet
owltools.idmap.
AbstractMappingParser
owltools.idmap.
IDMappingPIRParser
owltools.idmap.
UniProtIDMapParser
owltools.io.
AbstractRenderer
(implements owltools.io.
GraphRenderer
)
owltools.io.
AbstractClosureRenderer
(implements owltools.io.
GraphRenderer
)
owltools.io.
ChadoGraphClosureRenderer
(implements owltools.io.
GraphRenderer
)
owltools.io.
ClassExpressionGraphClosureRenderer
(implements owltools.io.
GraphRenderer
)
owltools.io.
CompactGraphClosureRenderer
(implements owltools.io.
GraphRenderer
)
owltools.io.
GraphClosureRenderer
(implements owltools.io.
GraphRenderer
)
owltools.io.
EdgeTableRenderer
(implements owltools.io.
GraphRenderer
)
owltools.io.
InferredParentRenderer
(implements owltools.io.
GraphRenderer
)
owltools.io.
TableRenderer
(implements owltools.io.
GraphRenderer
)
owltools.util.
AbstractTarjan
<NODE> (implements owltools.util.
Tarjan
<NODE>)
owltools.util.
MappingTarjan
<T>
owltools.phenolog.
Attribute
owltools.graph.
AxiomAnnotationTools
owltools.graph.
AxiomAnnotationTools.AxiomAnnotationsChanger
(implements org.semanticweb.owlapi.model.OWLAxiomVisitorEx<O>)
owltools.frame.jsonld.
BaseLD
(implements owltools.frame.
Base
)
owltools.frame.jsonld.
AnnotationLD
(implements owltools.frame.
Annotation
)
owltools.frame.jsonld.
ExpressionLD
(implements owltools.frame.
Expression
)
owltools.frame.jsonld.
ClassExpressionLD
(implements owltools.frame.
ClassExpression
)
owltools.frame.jsonld.
NaryBooleanClassExpressionLD
(implements owltools.frame.
NaryBooleanClassExpression
)
owltools.frame.jsonld.
IntersectionOfLD
(implements owltools.frame.
IntersectionOf
)
owltools.frame.jsonld.
RestrictionLD
(implements owltools.frame.
Restriction
)
owltools.frame.jsonld.
SomeValuesFromLD
(implements owltools.frame.
SomeValuesFrom
)
owltools.frame.jsonld.
StubLD
(implements owltools.frame.
Stub
)
owltools.frame.jsonld.
ClassStubLD
(implements owltools.frame.
ClassStub
)
owltools.frame.jsonld.
FrameLD
(implements owltools.frame.
Frame
)
owltools.frame.jsonld.
ClassFrameLD
(implements owltools.frame.
ClassFrame
)
owltools.frame.jsonld.
OntologyFrameLD
(implements owltools.frame.
OntologyFrame
)
owltools.frame.jsonld.
PropertyStubLD
(implements owltools.frame.
PropertyStub
)
owltools.util.
BloomFilter
<E> (implements java.io.
Serializable
)
owltools.mooncat.
BridgeExtractor
owltools.mooncat.
BridgeExtractor.Combo
owltools.graph.
CardinalityContraintsTools
owltools.graph.
CardinalityContraintsTools.CardinalityReporter
owltools.io.
CatalogXmlIRIMapper
(implements org.semanticweb.owlapi.model.OWLOntologyIRIMapper)
owltools.util.
ClassExpressionPair
owltools.mooncat.
DLQueryTool
owltools.mooncat.
EquivalenceSetMergeUtil
owltools.frame.
FrameMaker
owltools.frame.jsonld.
FrameMakerLD
owltools.reasoner.
GCIUtil
owltools.phenolog.
GenePheno
(implements java.lang.
Comparable
<T>)
owltools.phenolog.
GenePhenoTsvParser
owltools.io.
GeneralObjectDeserializer
(implements com.google.gson.JsonDeserializer<T>)
owltools.io.
GMTParser
owltools.gfx.
GraphicsConfig
owltools.gfx.
GraphicsConfig.RelationConfig
owltools.reasoner.
GraphReasonerFactory
(implements org.semanticweb.owlapi.reasoner.OWLReasonerFactory)
owltools.gfx.
GraphStyle
owltools.idmap.
IDMapHandler
owltools.idmap.
IDMapPairWriter
owltools.gfx.
ImageRender
owltools.gfx.
HierarchyImage
owltools.mooncat.ontologymetadata.
ImportChainDotWriter
owltools.mooncat.ontologymetadata.
ImportChainExtractor
owltools.io.
ImportClosureSlurper
owltools.phenolog.
Individual
(implements java.lang.
Comparable
<T>)
owltools.phenolog.
IndividualPair
(implements java.lang.
Comparable
<T>)
owltools.
InferenceBuilder
owltools.
InferenceBuilder.ConsistencyReport
owltools.
InferenceBuilder.PotentialRedundant
owltools.
JustifyAssertionsTool
owltools.
JustifyAssertionsTool.JustifyResult
owltools.reasoner.
LazyExpressionMaterializingReasonerFactory
(implements org.semanticweb.owlapi.reasoner.OWLReasonerFactory)
owltools.tr.
LinkMaker
owltools.tr.
LinkMaker.LinkMakerResult
owltools.tr.
LinkMaker.LinkPattern
owltools.io.
LocalMirrorIRIMapper
(implements org.semanticweb.owlapi.model.OWLOntologyIRIMapper)
owltools.phenolog.
Main
owltools.mooncat.
Mooncat
org.obolibrary.oboformat.writer.OBOFormatWriter.OBODocNameProvider (implements org.obolibrary.oboformat.writer.OBOFormatWriter.NameProvider)
owltools.io.
ParserWrapper.OboAndOwlNameProvider
owltools.mooncat.ontologymetadata.
OntologyAnnotation
owltools.mooncat.ontologymetadata.
OntologyMetadata
owltools.mooncat.ontologymetadata.
OntologyMetadataMarkdownWriter
owltools.mooncat.ontologymetadata.
OntologySetMetadata
owltools.cli.
Opts
org.semanticweb.owlapi.model.OWLDocumentFormatImpl (implements org.semanticweb.owlapi.model.OWLDocumentFormat)
owltools.io.
OWLJSONFormat
owltools.graph.
OWLGraphEdge
owltools.gfx.
OWLGraphLayoutNode
(implements uk.ac.ebi.interpro.graphdraw.LayoutNode, uk.ac.ebi.interpro.graphdraw.Node)
owltools.gfx.
OWLGraphLayoutNode.SVGRectangle
owltools.gfx.
OWLGraphLayoutRenderer
owltools.gfx.
OWLGraphvizRenderer
owltools.graph.
OWLGraphManipulator
owltools.gfx.
OWLGraphStrokeEdge.SVGEdge
owltools.graph.
OWLGraphUtil
owltools.graph.
OWLGraphWrapper.Synonym
(implements owltools.graph.
OWLGraphWrapper.ISynonym
)
owltools.graph.
OWLGraphWrapperBasic
owltools.graph.
OWLGraphWrapperExtended
owltools.graph.
OWLGraphWrapperEdges
owltools.graph.
OWLGraphWrapperEdgesExtended
owltools.graph.
OWLGraphWrapperEdgesAdvanced
(implements java.io.
Closeable
)
owltools.graph.
OWLGraphWrapper
owltools.graph.
OWLGraphWrapperEdges.Config
owltools.io.
OWLGsonParser
owltools.io.
OWLGsonRenderer
owltools.util.
OwlHelper
owltools.mooncat.
OWLInAboxTranslator
owltools.io.
OWLPrettyPrinter
owltools.io.
OWLPrettyPrinter.LabelProvider
(implements org.semanticweb.owlapi.util.ShortFormProvider)
owltools.graph.
OWLQuantifiedProperty
org.semanticweb.owlapi.reasoner.impl.OWLReasonerBase (implements org.semanticweb.owlapi.reasoner.OWLReasoner)
owltools.reasoner.
GraphReasoner
(implements org.geneontology.reasoner.OWLExtendedReasoner)
owltools.reasoner.
LazyExpressionMaterializingReasoner
(implements org.semanticweb.owlapi.reasoner.OWLReasoner)
owltools.graph.shunt.
OWLShuntEdge
owltools.graph.shunt.
OWLShuntGraph
owltools.graph.shunt.
OWLShuntGraphDFIterator
(implements java.util.
Iterator
<E>)
owltools.graph.shunt.
OWLShuntNode
owltools.io.
ParserWrapper
owltools.io.
ParserWrapper.OWLGraphWrapperNameProvider
(implements org.obolibrary.oboformat.writer.OBOFormatWriter.NameProvider)
owltools.phenolog.
Pheno
(implements java.lang.
Comparable
<T>)
owltools.phenolog.
PhenologEngine
owltools.phenolog.
PhenoTransitiveClosure
owltools.profile.
Profiler
owltools.mooncat.
PropertyExtractor
owltools.mooncat.
PropertyViewOntologyBuilder
owltools.mooncat.
ProvenanceReasonerWrapper
owltools.mooncat.
QuerySubsetGenerator
owltools.diff.
ReasonerDiff
owltools.
RedundantInferences
owltools.
RedundantInferences.RedundantAxiom
owltools.graph.
RelationSets
owltools.diff.
ResonerDiffCommandLine
owltools.util.
ShuntGraphUtils
owltools.util.
ShuntGraphUtils.ShuntGraphPair
owltools.mooncat.
SpeciesMergeUtil
owltools.mooncat.
SpeciesSubsetterUtil
owltools.io.
StanzaToOWLConverter
owltools.io.
StanzaToOWLConverter.Config
owltools.io.
StanzaToOWLConverter.Mapping
owltools.io.
StanzaToOWLConverter.Stanza
uk.ac.ebi.interpro.graphdraw.StrokeEdge<N> (implements uk.ac.ebi.interpro.graphdraw.LayoutEdge<N>)
owltools.gfx.
OWLGraphStrokeEdge
owltools.io.
TableToAxiomConverter
owltools.io.
TableToAxiomConverter.Config
owltools.
TBoxUnFoldingTool
owltools.tr.
TemplatedTransformer
owltools.tr.
TemplatedTransformer.Mapping
java.lang.
Throwable
(implements java.io.
Serializable
)
java.lang.
Exception
owltools.mooncat.ontologymetadata.
ImportChainDotWriter.UnExpectedStructureException
owltools.graph.
SharedLabelException
owltools.mooncat.
SpeciesMergeUtil.UnmergeableOntologyException
owltools.
TBoxUnFoldingTool.NonDeterministicUnfoldException
owltools.mooncat.
TransformationUtils
owltools.version.
VersionInfo
Interface Hierarchy
owltools.util.
Adjacency
<T>
owltools.frame.
Base
owltools.frame.
Annotation
owltools.frame.
ClassExpression
owltools.frame.
IntersectionOf
owltools.frame.
NaryBooleanClassExpression
owltools.frame.
IntersectionOf
owltools.frame.
ClassFrame
owltools.frame.
ClassStub
owltools.frame.
Expression
owltools.frame.
ClassExpression
owltools.frame.
IntersectionOf
owltools.frame.
NaryBooleanClassExpression
owltools.frame.
IntersectionOf
owltools.frame.
ClassFrame
owltools.frame.
ClassStub
owltools.frame.
Frame
owltools.frame.
ClassFrame
owltools.frame.
OntologyFrame
owltools.frame.
IntersectionOf
owltools.frame.
NaryBooleanClassExpression
owltools.frame.
IntersectionOf
owltools.frame.
OntologyFrame
owltools.frame.
PropertyStub
owltools.frame.
Restriction
owltools.frame.
SomeValuesFrom
owltools.frame.
SomeValuesFrom
owltools.frame.
Stub
owltools.frame.
ClassFrame
owltools.frame.
ClassStub
owltools.frame.
Frame
owltools.frame.
ClassFrame
owltools.frame.
OntologyFrame
owltools.frame.
OntologyFrame
owltools.frame.
PropertyStub
owltools.frame.
Frame
owltools.frame.
ClassFrame
owltools.frame.
OntologyFrame
owltools.frame.
IntersectionOf
owltools.frame.
NaryBooleanClassExpression
owltools.frame.
IntersectionOf
owltools.frame.
OntologyFrame
owltools.frame.
PropertyStub
owltools.frame.
Restriction
owltools.frame.
SomeValuesFrom
owltools.frame.
SomeValuesFrom
owltools.frame.
Stub
owltools.frame.
ClassFrame
owltools.frame.
ClassStub
owltools.frame.
Frame
owltools.frame.
ClassFrame
owltools.frame.
OntologyFrame
owltools.frame.
OntologyFrame
owltools.frame.
PropertyStub
owltools.io.
GraphReader
owltools.io.
GraphRenderer
owltools.
InferenceBuilder.OWLClassFilter
owltools.graph.
OWLGraphWrapper.ISynonym
owltools.util.
Tarjan
<NODE>
Enum Hierarchy
java.lang.
Object
java.lang.
Enum
<E> (implements java.lang.
Comparable
<T>, java.io.
Serializable
)
owltools.gfx.
RelationType
owltools.gfx.
RelationType.Polarity
owltools.graph.
OWLQuantifiedProperty.Quantifier
owltools.idmap.
IDMappingPIRParser.Types
owltools.vocab.
OBOUpperVocabulary
owltools.vocab.
OBONamespaces
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