owltools.ontologyrelease.reports
Class OBOTermsAltIdsReport

java.lang.Object
  extended by owltools.ontologyrelease.reports.OntologyReportGenerator.AbstractReport
      extended by owltools.ontologyrelease.reports.OBOTermsAltIdsReport
All Implemented Interfaces:
OntologyReportGenerator.OntologyReport

public class OBOTermsAltIdsReport
extends OntologyReportGenerator.AbstractReport

OntologyReportGenerator.OntologyReport for GeneOntology terms with alternative identifiers.


Constructor Summary
OBOTermsAltIdsReport(OWLGraphWrapper graph)
           
OBOTermsAltIdsReport(String filePrefix)
           
OBOTermsAltIdsReport(String filePrefix, String fileHeader)
           
 
Method Summary
protected  String getFileHeader()
           
 String getReportFileName()
          Get the target file name for this report.
 void handleTerm(PrintWriter writer, org.semanticweb.owlapi.model.OWLClass owlClass, OWLGraphWrapper graph)
          Handle an OWLObject during the report.
 
Methods inherited from class owltools.ontologyrelease.reports.OntologyReportGenerator.AbstractReport
end, getReportSubFolderName, start, writeTabs
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

OBOTermsAltIdsReport

public OBOTermsAltIdsReport(OWLGraphWrapper graph)

OBOTermsAltIdsReport

public OBOTermsAltIdsReport(String filePrefix)

OBOTermsAltIdsReport

public OBOTermsAltIdsReport(String filePrefix,
                            String fileHeader)
Method Detail

getReportFileName

public String getReportFileName()
Description copied from interface: OntologyReportGenerator.OntologyReport
Get the target file name for this report.

Returns:
fileName

getFileHeader

protected String getFileHeader()
Overrides:
getFileHeader in class OntologyReportGenerator.AbstractReport

handleTerm

public void handleTerm(PrintWriter writer,
                       org.semanticweb.owlapi.model.OWLClass owlClass,
                       OWLGraphWrapper graph)
                throws IOException
Description copied from interface: OntologyReportGenerator.OntologyReport
Handle an OWLObject during the report.

Throws:
IOException


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