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Packages that use CommandRunner.Opts | |
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owltools.cli | CLI - Command Line Interface |
Uses of CommandRunner.Opts in owltools.cli |
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Methods in owltools.cli with parameters of type CommandRunner.Opts | |
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void |
SimCommandRunner.allClassIC(CommandRunner.Opts opts)
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void |
SolrCommandRunner.flexLoadOntologySolr(CommandRunner.Opts opts)
TODO: Try experimental flexible loader. |
void |
GafCommandRunner.gaf(CommandRunner.Opts opts)
Used for loading GAFs into memory |
void |
GafCommandRunner.gaf2Owl(CommandRunner.Opts opts)
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void |
GafCommandRunner.gafQuery(CommandRunner.Opts opts)
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void |
GafCommandRunner.gafTermCounts(CommandRunner.Opts opts)
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void |
GafCommandRunner.gafXpPredict(CommandRunner.Opts opts)
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void |
SimCommandRunner.getAncestorsWithIC(CommandRunner.Opts opts)
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void |
SimCommandRunner.getIC(CommandRunner.Opts opts)
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void |
SimCommandRunner.lcsx(CommandRunner.Opts opts)
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void |
SimCommandRunner.lcsxAll(CommandRunner.Opts opts)
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void |
SolrCommandRunner.loadGafSolr(CommandRunner.Opts opts)
Requires the --gaf argument (or something else that fills the gafdoc object). |
void |
SolrCommandRunner.loadGafsSolr(CommandRunner.Opts opts)
Used for loading a list of GAFs into GOlr. |
void |
SolrCommandRunner.loadOntologySolr(CommandRunner.Opts opts)
Used for loading whatever ontology stuff we have into GOlr. |
void |
TaxonCommandRunner.makeClassTaxonMatrix(CommandRunner.Opts opts)
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void |
TaxonCommandRunner.makeTaxonSet(CommandRunner.Opts opts)
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void |
SimCommandRunner.mergeSim(CommandRunner.Opts opts)
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void |
SolrCommandRunner.purgeSolr(CommandRunner.Opts opts)
Manually purge the index to try again. |
org.semanticweb.owlapi.model.OWLObject |
CommandRunner.resolveEntity(CommandRunner.Opts opts)
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Set<org.semanticweb.owlapi.model.OWLObject> |
CommandRunner.resolveEntityList(CommandRunner.Opts opts)
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void |
CommandRunner.run(CommandRunner.Opts opts)
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void |
GafCommandRunner.runGAFChecks(CommandRunner.Opts opts)
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void |
SimCommandRunner.saveSim(CommandRunner.Opts opts)
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void |
GafCommandRunner.setGAFReportFile(CommandRunner.Opts opts)
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void |
SimCommandRunner.setSimMethod(CommandRunner.Opts opts)
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void |
SolrCommandRunner.setSolrUrl(CommandRunner.Opts opts)
Set an optional Solr URL to use with Solr options so they don't have to be specified separately for every option. |
void |
SimCommandRunner.sim(CommandRunner.Opts opts)
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void |
SimCommandRunner.simAll(CommandRunner.Opts opts)
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