Uses of Class
owltools.cli.tools.CLIMethod

Packages that use CLIMethod
owltools.cli CLI - Command Line Interface 
 

Uses of CLIMethod in owltools.cli
 

Methods in owltools.cli with annotations of type CLIMethod
 void SimCommandRunner.allClassIC(CommandRunner.Opts opts)
           
 void SolrCommandRunner.flexLoadOntologySolr(CommandRunner.Opts opts)
          TODO: Try experimental flexible loader.
 void GafCommandRunner.gaf(CommandRunner.Opts opts)
          Used for loading GAFs into memory
 void GafCommandRunner.gaf2Owl(CommandRunner.Opts opts)
           
 void GafCommandRunner.gafQuery(CommandRunner.Opts opts)
           
 void GafCommandRunner.gafTermCounts(CommandRunner.Opts opts)
           
 void GafCommandRunner.gafXpPredict(CommandRunner.Opts opts)
           
 void SimCommandRunner.getAncestorsWithIC(CommandRunner.Opts opts)
           
 void SimCommandRunner.getIC(CommandRunner.Opts opts)
           
 void SimCommandRunner.lcsx(CommandRunner.Opts opts)
           
 void SimCommandRunner.lcsxAll(CommandRunner.Opts opts)
           
 void SolrCommandRunner.loadGafSolr(CommandRunner.Opts opts)
          Requires the --gaf argument (or something else that fills the gafdoc object).
 void SolrCommandRunner.loadGafsSolr(CommandRunner.Opts opts)
          Used for loading a list of GAFs into GOlr.
 void SolrCommandRunner.loadOntologySolr(CommandRunner.Opts opts)
          Used for loading whatever ontology stuff we have into GOlr.
 void TaxonCommandRunner.makeClassTaxonMatrix(CommandRunner.Opts opts)
           
 void TaxonCommandRunner.makeTaxonSet(CommandRunner.Opts opts)
           
 void SimCommandRunner.mergeSim(CommandRunner.Opts opts)
           
 void SolrCommandRunner.purgeSolr(CommandRunner.Opts opts)
          Manually purge the index to try again.
 void GafCommandRunner.runGAFChecks(CommandRunner.Opts opts)
           
 void SimCommandRunner.saveSim(CommandRunner.Opts opts)
           
 void GafCommandRunner.setGAFReportFile(CommandRunner.Opts opts)
           
 void SimCommandRunner.setSimMethod(CommandRunner.Opts opts)
           
 void SolrCommandRunner.setSolrUrl(CommandRunner.Opts opts)
          Set an optional Solr URL to use with Solr options so they don't have to be specified separately for every option.
 void SimCommandRunner.sim(CommandRunner.Opts opts)
           
 void SimCommandRunner.simAll(CommandRunner.Opts opts)
           
 



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