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java.lang.Objectowltools.cli.CommandRunner
owltools.cli.GafCommandRunner
owltools.cli.TaxonCommandRunner
owltools.cli.SolrCommandRunner
public class SolrCommandRunner
Solr/GOlr loading.
Nested Class Summary |
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Nested classes/interfaces inherited from class owltools.cli.CommandRunner |
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CommandRunner.OptionException, CommandRunner.Opts |
Field Summary |
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Fields inherited from class owltools.cli.GafCommandRunner |
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gafdoc |
Fields inherited from class owltools.cli.CommandRunner |
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exitOnException, g, owlObjectCachedSet, owlpp, pw, queryOntology, reasoner, reasonerName |
Constructor Summary | |
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SolrCommandRunner()
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Method Summary | |
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void |
configRead(CommandRunner.Opts opts)
Output (STDOUT) a XML segment to put into the Solr schema file after reading the YAML file. |
void |
dumpShuntGraphs(CommandRunner.Opts opts)
Used for generating output for units tests in other languages. |
void |
flexDumpOntologySolr(CommandRunner.Opts opts)
Dump experimental flexible loader output to JSON(?) blob. |
void |
flexLoadOntologySolr(CommandRunner.Opts opts)
Experimental flexible loader. |
void |
loadGafSolr(CommandRunner.Opts opts)
Requires the --gaf argument (or something else that fills the gafdoc object). |
void |
loadGafsSolr(CommandRunner.Opts opts)
Used for loading a list of GAFs into GOlr. |
void |
loadGPADsSolr(CommandRunner.Opts opts)
Used for loading a list of GPAD pairs into GOlr. |
void |
loadOntologySolr(CommandRunner.Opts opts)
Deprecated. |
void |
purgeSolr(CommandRunner.Opts opts)
Manually purge the index to try again. |
void |
setSolrUrl(CommandRunner.Opts opts)
Set an optional Solr URL to use with Solr options so they don't have to be specified separately for every option. |
void |
solrSchemaDump(CommandRunner.Opts opts)
Output (STDOUT) XML segment to put into the Solr schema file after reading the YAML configuration file(s). |
Methods inherited from class owltools.cli.TaxonCommandRunner |
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makeClassTaxonMatrix, makeTaxonSet |
Methods inherited from class owltools.cli.GafCommandRunner |
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createRdfXml, gaf, gaf2Owl, gafQuery, gafTermCounts, gafXpPredict, runGAFChecks, setGAFReportFile, writeXgmml |
Methods inherited from class owltools.cli.CommandRunner |
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exit, help, helpFooter, parseArgString, resolveClass, resolveEntity, resolveEntity, resolveEntityList, resolveObjectProperty, run, run, summarizeOntology |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public SolrCommandRunner()
Method Detail |
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public void configRead(CommandRunner.Opts opts)
opts
- public void solrSchemaDump(CommandRunner.Opts opts)
opts
- public void setSolrUrl(CommandRunner.Opts opts)
opts
- public void purgeSolr(CommandRunner.Opts opts) throws Exception
opts
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Exception
@Deprecated public void loadOntologySolr(CommandRunner.Opts opts) throws Exception
opts
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Exception
public void flexLoadOntologySolr(CommandRunner.Opts opts) throws Exception
opts
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Exception
public void flexDumpOntologySolr(CommandRunner.Opts opts) throws Exception
opts
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Exception
public void loadGafsSolr(CommandRunner.Opts opts) throws Exception
opts
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Exception
public void loadGafSolr(CommandRunner.Opts opts) throws Exception
opts
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Exception
public void loadGPADsSolr(CommandRunner.Opts opts) throws Exception
opts
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Exception
public void dumpShuntGraphs(CommandRunner.Opts opts) throws Exception
opts
-
Exception
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