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Packages that use CLIMethod | |
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owltools.cli | CLI - Command Line Interface |
Uses of CLIMethod in owltools.cli |
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Methods in owltools.cli with annotations of type CLIMethod | |
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void |
SimCommandRunner.allClassIC(CommandRunner.Opts opts)
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void |
SolrCommandRunner.configRead(CommandRunner.Opts opts)
Output (STDOUT) a XML segment to put into the Solr schema file after reading the YAML file. |
void |
GafCommandRunner.createRdfXml(CommandRunner.Opts opts)
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void |
SolrCommandRunner.dumpShuntGraphs(CommandRunner.Opts opts)
Used for generating output for units tests in other languages. |
void |
SolrCommandRunner.flexDumpOntologySolr(CommandRunner.Opts opts)
Dump experimental flexible loader output to JSON(?) blob. |
void |
SolrCommandRunner.flexLoadOntologySolr(CommandRunner.Opts opts)
Experimental flexible loader. |
void |
GafCommandRunner.gaf(CommandRunner.Opts opts)
Used for loading GAFs into memory |
void |
GafCommandRunner.gaf2Owl(CommandRunner.Opts opts)
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void |
GafCommandRunner.gafQuery(CommandRunner.Opts opts)
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void |
GafCommandRunner.gafTermCounts(CommandRunner.Opts opts)
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void |
GafCommandRunner.gafXpPredict(CommandRunner.Opts opts)
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void |
SimCommandRunner.getAncestorsWithIC(CommandRunner.Opts opts)
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void |
SimCommandRunner.getIC(CommandRunner.Opts opts)
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void |
SimCommandRunner.lcsx(CommandRunner.Opts opts)
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void |
SimCommandRunner.lcsxAll(CommandRunner.Opts opts)
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void |
SolrCommandRunner.loadGafSolr(CommandRunner.Opts opts)
Requires the --gaf argument (or something else that fills the gafdoc object). |
void |
SolrCommandRunner.loadGafsSolr(CommandRunner.Opts opts)
Used for loading a list of GAFs into GOlr. |
void |
SolrCommandRunner.loadGPADsSolr(CommandRunner.Opts opts)
Used for loading a list of GPAD pairs into GOlr. |
void |
SolrCommandRunner.loadOntologySolr(CommandRunner.Opts opts)
Deprecated. |
void |
TaxonCommandRunner.makeClassTaxonMatrix(CommandRunner.Opts opts)
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void |
TaxonCommandRunner.makeTaxonSet(CommandRunner.Opts opts)
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void |
SimCommandRunner.mergeSim(CommandRunner.Opts opts)
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void |
SolrCommandRunner.purgeSolr(CommandRunner.Opts opts)
Manually purge the index to try again. |
void |
GafCommandRunner.runGAFChecks(CommandRunner.Opts opts)
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void |
JsCommandRunner.runJavaScript(CommandRunner.Opts opts)
Run the given js with the current graph (and reasoner). |
void |
SimCommandRunner.saveSim(CommandRunner.Opts opts)
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void |
GafCommandRunner.setGAFReportFile(CommandRunner.Opts opts)
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void |
SimCommandRunner.setSimMethod(CommandRunner.Opts opts)
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void |
SolrCommandRunner.setSolrUrl(CommandRunner.Opts opts)
Set an optional Solr URL to use with Solr options so they don't have to be specified separately for every option. |
void |
SimCommandRunner.sim(CommandRunner.Opts opts)
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void |
SimCommandRunner.simAll(CommandRunner.Opts opts)
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void |
SolrCommandRunner.solrSchemaDump(CommandRunner.Opts opts)
Output (STDOUT) XML segment to put into the Solr schema file after reading the YAML configuration file(s). |
void |
GafCommandRunner.writeXgmml(CommandRunner.Opts opts)
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