owltools.cli
Class TaxonCommandRunner

java.lang.Object
  extended by owltools.cli.CommandRunner
      extended by owltools.cli.GafCommandRunner
          extended by owltools.cli.TaxonCommandRunner
Direct Known Subclasses:
SolrCommandRunner

public class TaxonCommandRunner
extends GafCommandRunner

Command-line module for taxon constraints.


Nested Class Summary
 
Nested classes/interfaces inherited from class owltools.cli.CommandRunner
CommandRunner.OptionException, CommandRunner.Opts
 
Field Summary
 
Fields inherited from class owltools.cli.GafCommandRunner
gafdoc
 
Fields inherited from class owltools.cli.CommandRunner
exitOnException, g, owlObjectCachedSet, owlpp, pw, queryOntology, reasoner, reasonerName
 
Constructor Summary
TaxonCommandRunner()
           
 
Method Summary
 void makeClassTaxonMatrix(CommandRunner.Opts opts)
           
 void makeTaxonSet(CommandRunner.Opts opts)
           
 
Methods inherited from class owltools.cli.GafCommandRunner
createRdfXml, gaf, gaf2Owl, gafQuery, gafTermCounts, gafXpPredict, runGAFChecks, setGAFReportFile, writeXgmml
 
Methods inherited from class owltools.cli.CommandRunner
exit, help, helpFooter, parseArgString, resolveClass, resolveEntity, resolveEntity, resolveEntityList, resolveObjectProperty, run, run, summarizeOntology
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

TaxonCommandRunner

public TaxonCommandRunner()
Method Detail

makeClassTaxonMatrix

public void makeClassTaxonMatrix(CommandRunner.Opts opts)
                          throws Exception
Throws:
Exception

makeTaxonSet

public void makeTaxonSet(CommandRunner.Opts opts)
                  throws Exception
Throws:
Exception


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