owltools.cli
Class JsCommandRunner

java.lang.Object
  extended by owltools.cli.CommandRunner
      extended by owltools.cli.GafCommandRunner
          extended by owltools.cli.TaxonCommandRunner
              extended by owltools.cli.SolrCommandRunner
                  extended by owltools.cli.SimCommandRunner
                      extended by owltools.cli.JsCommandRunner

public class JsCommandRunner
extends SimCommandRunner

Provide a JavaScript interpreter for OWLTools. Allows to use/modify the internal OWLGraphWrapper with dynamic scripts.


Nested Class Summary
 
Nested classes/interfaces inherited from class owltools.cli.CommandRunner
CommandRunner.OptionException, CommandRunner.Opts
 
Field Summary
 
Fields inherited from class owltools.cli.GafCommandRunner
gafdoc
 
Fields inherited from class owltools.cli.CommandRunner
exitOnException, g, owlObjectCachedSet, owlpp, pw, queryOntology, reasoner, reasonerName
 
Constructor Summary
JsCommandRunner()
           
 
Method Summary
 void runJavaScript(CommandRunner.Opts opts)
          Run the given js with the current graph (and reasoner).
 
Methods inherited from class owltools.cli.SimCommandRunner
allClassIC, getAncestorsWithIC, getIC, lcsx, lcsxAll, mergeSim, saveSim, setSimMethod, sim, simAll
 
Methods inherited from class owltools.cli.SolrCommandRunner
configRead, dumpShuntGraphs, flexDumpOntologySolr, flexLoadOntologySolr, loadGafSolr, loadGafsSolr, loadGPADsSolr, loadOntologySolr, purgeSolr, setSolrUrl, solrSchemaDump
 
Methods inherited from class owltools.cli.TaxonCommandRunner
makeClassTaxonMatrix, makeTaxonSet
 
Methods inherited from class owltools.cli.GafCommandRunner
createRdfXml, gaf, gaf2Owl, gafQuery, gafTermCounts, gafXpPredict, runGAFChecks, setGAFReportFile, writeXgmml
 
Methods inherited from class owltools.cli.CommandRunner
exit, help, helpFooter, parseArgString, resolveClass, resolveEntity, resolveEntity, resolveEntityList, resolveObjectProperty, run, run, summarizeOntology
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

JsCommandRunner

public JsCommandRunner()
Method Detail

runJavaScript

public void runJavaScript(CommandRunner.Opts opts)
Run the given js with the current graph (and reasoner).

Parameters:
opts -


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