Uses of Class
owltools.cli.CommandRunner.Opts

Packages that use CommandRunner.Opts
owltools.cli CLI - Command Line Interface 
 

Uses of CommandRunner.Opts in owltools.cli
 

Methods in owltools.cli with parameters of type CommandRunner.Opts
 void SimCommandRunner.allClassIC(CommandRunner.Opts opts)
           
 void SolrCommandRunner.configRead(CommandRunner.Opts opts)
          Output (STDOUT) a XML segment to put into the Solr schema file after reading the YAML file.
 void GafCommandRunner.createRdfXml(CommandRunner.Opts opts)
           
 void SolrCommandRunner.dumpShuntGraphs(CommandRunner.Opts opts)
          Used for generating output for units tests in other languages.
 void SolrCommandRunner.flexDumpOntologySolr(CommandRunner.Opts opts)
          Dump experimental flexible loader output to JSON(?) blob.
 void SolrCommandRunner.flexLoadOntologySolr(CommandRunner.Opts opts)
          Experimental flexible loader.
 void GafCommandRunner.gaf(CommandRunner.Opts opts)
          Used for loading GAFs into memory
 void GafCommandRunner.gaf2Owl(CommandRunner.Opts opts)
           
 void GafCommandRunner.gafQuery(CommandRunner.Opts opts)
           
 void GafCommandRunner.gafTermCounts(CommandRunner.Opts opts)
           
 void GafCommandRunner.gafXpPredict(CommandRunner.Opts opts)
           
 void SimCommandRunner.getAncestorsWithIC(CommandRunner.Opts opts)
           
 void SimCommandRunner.getIC(CommandRunner.Opts opts)
           
 void SimCommandRunner.lcsx(CommandRunner.Opts opts)
           
 void SimCommandRunner.lcsxAll(CommandRunner.Opts opts)
           
 void SolrCommandRunner.loadGafSolr(CommandRunner.Opts opts)
          Requires the --gaf argument (or something else that fills the gafdoc object).
 void SolrCommandRunner.loadGafsSolr(CommandRunner.Opts opts)
          Used for loading a list of GAFs into GOlr.
 void SolrCommandRunner.loadGPADsSolr(CommandRunner.Opts opts)
          Used for loading a list of GPAD pairs into GOlr.
 void SolrCommandRunner.loadOntologySolr(CommandRunner.Opts opts)
          Deprecated. 
 void TaxonCommandRunner.makeClassTaxonMatrix(CommandRunner.Opts opts)
           
 void TaxonCommandRunner.makeTaxonSet(CommandRunner.Opts opts)
           
 void SimCommandRunner.mergeSim(CommandRunner.Opts opts)
           
 void SolrCommandRunner.purgeSolr(CommandRunner.Opts opts)
          Manually purge the index to try again.
 org.semanticweb.owlapi.model.OWLObject CommandRunner.resolveEntity(CommandRunner.Opts opts)
           
 Set<org.semanticweb.owlapi.model.OWLObject> CommandRunner.resolveEntityList(CommandRunner.Opts opts)
           
 void CommandRunner.run(CommandRunner.Opts opts)
           
 void GafCommandRunner.runGAFChecks(CommandRunner.Opts opts)
           
 void JsCommandRunner.runJavaScript(CommandRunner.Opts opts)
          Run the given js with the current graph (and reasoner).
 void SimCommandRunner.saveSim(CommandRunner.Opts opts)
           
 void GafCommandRunner.setGAFReportFile(CommandRunner.Opts opts)
           
 void SimCommandRunner.setSimMethod(CommandRunner.Opts opts)
           
 void SolrCommandRunner.setSolrUrl(CommandRunner.Opts opts)
          Set an optional Solr URL to use with Solr options so they don't have to be specified separately for every option.
 void SimCommandRunner.sim(CommandRunner.Opts opts)
           
 void SimCommandRunner.simAll(CommandRunner.Opts opts)
           
 void SolrCommandRunner.solrSchemaDump(CommandRunner.Opts opts)
          Output (STDOUT) XML segment to put into the Solr schema file after reading the YAML configuration file(s).
 void GafCommandRunner.writeXgmml(CommandRunner.Opts opts)
           
 



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