public abstract class AbstractOBOSimPreProcessor extends LCSEnabledSimPreProcessor
Modifier and Type | Field and Description |
---|---|
String |
COMPOSED_PRIMARILY_OF |
String |
DEPENDS_ON |
String |
DEVELOPS_FROM |
String |
EXPRESSED_IN |
String |
HAS_PART |
String |
HAS_PHENOTYPE |
String |
INHERES_IN |
String |
INHERES_IN_PART_OF |
String |
PART_OF |
String |
QUALIFIER |
String |
RESULTS_IN_DEVELOPMENT_OF |
String |
RESULTS_IN_MORPHOGENESIS_OF |
defaultLCSElementFrequencyThreshold, defaultNewIntersectionSimJThreshold, lcsCache
classesToSkip, LOG, materializedClassExpressionMap, saveIntermediateStates, simProperties
Constructor and Description |
---|
AbstractOBOSimPreProcessor() |
Modifier and Type | Method and Description |
---|---|
protected void |
addPropertyChain(String p1,
String p2,
String pInferred) |
protected org.semanticweb.owlapi.model.IRI |
getIRIViaOBOSuffix(String iriSuffix) |
protected org.semanticweb.owlapi.model.OWLClass |
getOWLClassViaOBOSuffix(String iriSuffix) |
protected org.semanticweb.owlapi.model.OWLObjectProperty |
getOWLObjectPropertyViaOBOSuffix(String iriSuffix) |
void |
makePartOfReflexive() |
void |
makeReflexive(String oboId) |
generateLeastCommonSubsumers, generateLeastCommonSubsumersForAttributeClasses, getLowestCommonSubsumer, getLowestCommonSubsumer, getLowestCommonSubsumerClass, getNamedCommonSubsumers, getNamedCommonSubsumers, getNamedLowestCommonSubsumers, getNamedReflexiveSubsumers, getNamedSubsumers, getNamedSubsumers, makeClass
addAxiomsToOutput, addAxiomToOutput, addViewMapping, assertInferredForAttributeClasses, createPropertyView, createPropertyView, createPropertyView, createPropertyView, dispose, extractClassesFromDeclarations, filterUnused, flush, generateLabel, getAboxProperty, getAnyLabel, getAttributeClasses, getDirectAttributeClassExpressions, getInputOntology, getLabel, getOutputOntology, getProperty, getReasoner, getReflexiveSubClasses, getSimProperties, getViewClasses, ignoreClasses, isUpperLevel, makeReflexive, makeReflexive, makeViewClassIRI, makeViewClassIRI, materializeClassExpression, materializeClassExpressions, materializeClassExpressionsReferencedBy, MD5, preprocess, removeAxiomsFromOutput, removeDisjointClassesAxioms, removeUnreachableAxioms, saveState, setInputOntology, setOutputOntology, setOWLPrettyPrinter, setReasoner, setReasonerFactory, setSimProperties, trim
public String HAS_PHENOTYPE
public String HAS_PART
public String COMPOSED_PRIMARILY_OF
public String PART_OF
public String INHERES_IN
public String INHERES_IN_PART_OF
public String EXPRESSED_IN
public String DEVELOPS_FROM
public String RESULTS_IN_DEVELOPMENT_OF
public String RESULTS_IN_MORPHOGENESIS_OF
public String QUALIFIER
public String DEPENDS_ON
public void makePartOfReflexive()
public void makeReflexive(String oboId)
protected org.semanticweb.owlapi.model.OWLObjectProperty getOWLObjectPropertyViaOBOSuffix(String iriSuffix)
protected org.semanticweb.owlapi.model.OWLClass getOWLClassViaOBOSuffix(String iriSuffix)
protected org.semanticweb.owlapi.model.IRI getIRIViaOBOSuffix(String iriSuffix)
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