public class GOSimPreProcessor extends AbstractOBOSimPreProcessor
COMPOSED_PRIMARILY_OF, DEPENDS_ON, DEVELOPS_FROM, EXPRESSED_IN, HAS_PART, HAS_PHENOTYPE, INHERES_IN, INHERES_IN_PART_OF, PART_OF, QUALIFIER, RESULTS_IN_DEVELOPMENT_OF, RESULTS_IN_MORPHOGENESIS_OF
defaultLCSElementFrequencyThreshold, defaultNewIntersectionSimJThreshold, lcsCache
classesToSkip, LOG, materializedClassExpressionMap, saveIntermediateStates, simProperties
Constructor and Description |
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GOSimPreProcessor() |
Modifier and Type | Method and Description |
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void |
preprocess()
Generate output ontology
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addPropertyChain, getIRIViaOBOSuffix, getOWLClassViaOBOSuffix, getOWLObjectPropertyViaOBOSuffix, makePartOfReflexive, makeReflexive
generateLeastCommonSubsumers, generateLeastCommonSubsumersForAttributeClasses, getLowestCommonSubsumer, getLowestCommonSubsumer, getLowestCommonSubsumerClass, getNamedCommonSubsumers, getNamedCommonSubsumers, getNamedLowestCommonSubsumers, getNamedReflexiveSubsumers, getNamedSubsumers, getNamedSubsumers, makeClass
addAxiomsToOutput, addAxiomToOutput, addViewMapping, assertInferredForAttributeClasses, createPropertyView, createPropertyView, createPropertyView, createPropertyView, dispose, extractClassesFromDeclarations, filterUnused, flush, generateLabel, getAboxProperty, getAnyLabel, getAttributeClasses, getDirectAttributeClassExpressions, getInputOntology, getLabel, getOutputOntology, getProperty, getReasoner, getReflexiveSubClasses, getSimProperties, getViewClasses, ignoreClasses, isUpperLevel, makeReflexive, makeReflexive, makeViewClassIRI, makeViewClassIRI, materializeClassExpression, materializeClassExpressions, materializeClassExpressionsReferencedBy, MD5, removeAxiomsFromOutput, removeDisjointClassesAxioms, removeUnreachableAxioms, saveState, setInputOntology, setOutputOntology, setOWLPrettyPrinter, setReasoner, setReasonerFactory, setSimProperties, trim
public void preprocess()
SimPreProcessor
preprocess
in interface SimPreProcessor
preprocess
in class AbstractSimPreProcessor
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