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java.lang.Objectowltools.panther.PANTHERForest
public class PANTHERForest
Methods to simplify the work with sets of PANTHER trees.
See: PANTHERTree
.
Field Summary | |
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int |
fileCount
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Constructor Summary | |
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PANTHERForest(File pantherDir)
Create an instance for the given privitve array of files. |
Method Summary | |
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Set<PANTHERTree> |
getAssociatedTrees(String identifier)
Return the number of unique bioentity identifiers found in the set. |
int |
getNumberOfFilesInSet()
Return the number of files read into the set. |
int |
getNumberOfIdentifiersInSet()
Return the number of unique identifiers found in the set. |
PANTHERTree |
getTreeByID(String tree_id)
Return the tree for the tree unique identifier, If nothing was found, return null. |
Set<String> |
getTreeIDSet()
Return the unique tree identifiers found in the forest. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public int fileCount
Constructor Detail |
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public PANTHERForest(File pantherDir) throws IOException
pantherDir
-
IOException
Method Detail |
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public int getNumberOfFilesInSet()
public int getNumberOfIdentifiersInSet()
public Set<PANTHERTree> getAssociatedTrees(String identifier)
identifier
-
public Set<String> getTreeIDSet()
public PANTHERTree getTreeByID(String tree_id)
tree_id
- the id of the tree we want
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