public class PANTHERForest extends Object
PANTHERTree
.Modifier and Type | Field and Description |
---|---|
int |
fileCount |
Constructor and Description |
---|
PANTHERForest(File pantherDir)
Create an instance for the given privitve array of files.
|
Modifier and Type | Method and Description |
---|---|
Set<PANTHERTree> |
getAssociatedTrees(String identifier)
Return the number of unique bioentity identifiers found in the set.
|
int |
getNumberOfFilesInSet()
Return the number of files read into the set.
|
int |
getNumberOfIdentifiersInSet()
Return the number of unique identifiers found in the set.
|
PANTHERTree |
getTreeByID(String tree_id)
Return the tree for the tree unique identifier,
If nothing was found, return null.
|
Set<String> |
getTreeIDSet()
Return the unique tree identifiers found in the forest.
|
public PANTHERForest(File pantherDir) throws IOException
pantherDir
- IOException
public int getNumberOfFilesInSet()
public int getNumberOfIdentifiersInSet()
public Set<PANTHERTree> getAssociatedTrees(String identifier)
identifier
- public Set<String> getTreeIDSet()
public PANTHERTree getTreeByID(String tree_id)
tree_id
- the id of the tree we wantCopyright © 2010-2015. All Rights Reserved.