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A

aboutCommand() - Method in class owltools.web.OWLHandler
information about an ontology object (class, property, individual)
allSubClassOfCommand() - Method in class owltools.web.OWLHandler
Params: direct
assertEnabledByCommand() - Method in class owltools.web.OWLHandler
 
assertFactCommand() - Method in class owltools.web.OWLHandler
Deprecated.
assertOccursInCommand() - Method in class owltools.web.OWLHandler
 
assertTypeCommand() - Method in class owltools.web.OWLHandler
Deprecated.

C

classCommand() - Method in class owltools.web.OWLHandler
 
classSetCommand() - Method in class owltools.web.OWLHandler
 
compareAttributeSetsCommand() - Method in class owltools.web.OWLHandler
 

D

deleteFactCommand() - Method in class owltools.web.OWLHandler
Deprecated.
destroy() - Method in class owltools.web.OWLServer
 

G

getAnnotationSufficiencyScoreCommand() - Method in class owltools.web.OWLHandler
 
getAttributeInformationProfileCommand() - Method in class owltools.web.OWLHandler
 
getAxiomsCommand() - Method in class owltools.web.OWLHandler
Params: id
getCoAnnotatedClassesCommand() - Method in class owltools.web.OWLHandler
 
getCommandName() - Method in class owltools.web.OWLHandler
 
getFormat() - Method in class owltools.web.OWLHandler
 
getLowestCommonSubsumersCommand() - Method in class owltools.web.OWLHandler
 
getOutgoingEdgesCommand() - Method in class owltools.web.OWLHandler
 
getOwlSimMetadataCommand() - Method in class owltools.web.OWLHandler
 
getReasoner(String) - Method in class owltools.web.OWLServer
 
getSimilarClassesCommand() - Method in class owltools.web.OWLHandler
 
getSimilarIndividualsCommand() - Method in class owltools.web.OWLHandler
 
getSubClassesCommand() - Method in class owltools.web.OWLHandler
Params: direct, (id | expression)
getSuperClassesCommand() - Method in class owltools.web.OWLHandler
Params: direct, (id | expression)

H

handle(String, Request, HttpServletRequest, HttpServletResponse) - Method in class owltools.web.OWLServer
 
headerHTML() - Method in class owltools.web.OWLHandler
 
headerImage(String) - Method in class owltools.web.OWLHandler
 
headerOWL() - Method in class owltools.web.OWLHandler
 
headerText() - Method in class owltools.web.OWLHandler
 
helpCommand() - Method in class owltools.web.OWLHandler
 

I

info(String) - Method in class owltools.web.OWLHandler
 
isClassApplicableForTaxonCommand() - Method in class owltools.web.OWLHandler
tests which of a set of input classes (specified using id) is applicable for a set of taxa (specified using taxid)

M

makeSubsetOntologyCommand() - Method in class owltools.web.OWLHandler
generates a sub-ontology consisting only of classes specified using the id param.
memCommand() - Method in class owltools.web.OWLHandler
 

O

OWLHandler - Class in owltools.web
See http://code.google.com/p/owltools/wiki/WebServices
OWLHandler(OWLServer, OWLGraphWrapper, HttpServletRequest, HttpServletResponse) - Constructor for class owltools.web.OWLHandler
 
OWLHandler.Param - Enum in owltools.web
 
OWLHandler.ResultType - Enum in owltools.web
 
OWLHandler.ServerMetadata - Class in owltools.web
 
OWLServer - Class in owltools.web
See http://code.google.com/p/owltools/wiki/WebServices This is the core of the existing OWLTools services implementation It takes web API calls, creates an OWLHandler object and calls the appropriate method see OWLHandler for details
OWLServer(OWLGraphWrapper) - Constructor for class owltools.web.OWLServer
 
OWLServer(OWLGraphWrapper, OwlSim) - Constructor for class owltools.web.OWLServer
 
owltools.web - package owltools.web
OWLTools Web Services

P

printCachedObjects() - Method in class owltools.web.OWLHandler
 

Q

qvizCommand() - Method in class owltools.web.OWLHandler
visualize using QuickGO graphdraw.

R

returnJSON(Object) - Method in class owltools.web.OWLHandler
 

S

searchByAttributeSetCommand() - Method in class owltools.web.OWLHandler
 
ServerMetadata() - Constructor for class owltools.web.OWLHandler.ServerMetadata
 
setCommandName(String) - Method in class owltools.web.OWLHandler
 
setFormat(String) - Method in class owltools.web.OWLHandler
 
setMemoryUsage() - Method in class owltools.web.OWLHandler.ServerMetadata
 
setOwlSim(OwlSim) - Method in class owltools.web.OWLHandler
 

T

threadDumpCommand() - Method in class owltools.web.OWLHandler
 
topCommand() - Method in class owltools.web.OWLHandler
 

V

valueOf(String) - Static method in enum owltools.web.OWLHandler.Param
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum owltools.web.OWLHandler.ResultType
Returns the enum constant of this type with the specified name.
values() - Static method in enum owltools.web.OWLHandler.Param
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum owltools.web.OWLHandler.ResultType
Returns an array containing the constants of this enum type, in the order they are declared.
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