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Hierarchy For All Packages
Package Hierarchies:
owltools
,
owltools.cli
,
owltools.gaf
,
owltools.gaf.inference
,
owltools.gaf.owl
,
owltools.gaf.owl.test
,
owltools.gaf.test
,
owltools.gfx
,
owltools.gfx.test
,
owltools.graph
,
owltools.graph.test
,
owltools.idmap
,
owltools.io
,
owltools.io.test
,
owltools.mooncat
,
owltools.mooncat.test
,
owltools.ontologyrelease
,
owltools.ontologyrelease.gui
,
owltools.ontologyrelease.test
,
owltools.ontologyverification
,
owltools.ontologyverification.annotations
,
owltools.phenolog
,
owltools.profile
,
owltools.reasoner
,
owltools.sim
,
owltools.sim.test
,
owltools.test
,
owltools.util
,
owltools.web
Class Hierarchy
java.lang.
Object
owltools.gaf.inference.
AbstractAnnotationPredictor
(implements owltools.gaf.inference.
AnnotationPredictor
)
owltools.gaf.inference.
BasicAnnotationPropagator
(implements owltools.gaf.inference.
AnnotationPredictor
)
owltools.gaf.inference.
CompositionalClassPredictor
(implements owltools.gaf.inference.
AnnotationPredictor
)
owltools.io.
AbstractClosureReader
(implements owltools.io.
GraphReader
)
owltools.io.
CompactGraphClosureReader
owltools.io.
AbstractClosureRenderer
(implements owltools.io.
GraphRenderer
)
owltools.io.
ChadoGraphClosureRenderer
(implements owltools.io.
GraphRenderer
)
owltools.io.
CompactGraphClosureRenderer
(implements owltools.io.
GraphRenderer
)
owltools.io.
GraphClosureRenderer
(implements owltools.io.
GraphRenderer
)
org.eclipse.jetty.util.component.AbstractLifeCycle (implements org.eclipse.jetty.util.component.LifeCycle)
org.eclipse.jetty.util.component.AggregateLifeCycle (implements org.eclipse.jetty.util.component.Destroyable, org.eclipse.jetty.util.component.Dumpable)
org.eclipse.jetty.server.handler.AbstractHandler (implements org.eclipse.jetty.server.Handler)
owltools.web.
OWLServer
owltools.idmap.
AbstractMappingParser
owltools.idmap.
IDMappingPIRParser
owltools.idmap.
UniProtIDMapParser
owltools.gaf.
AnnotationSource
owltools.phenolog.
Attribute
owltools.gaf.
Bioentity
owltools.util.
BloomFilter
<E> (implements java.io.
Serializable
)
owltools.ontologyverification.
CheckResult
owltools.cli.
CommandLineInterface
owltools.cli.
CommandRunner
owltools.cli.
CommandRunner.Opts
java.awt.
Component
(implements java.awt.image.
ImageObserver
, java.awt.
MenuContainer
, java.io.
Serializable
)
java.awt.
Container
javax.swing.
JComponent
(implements java.io.
Serializable
)
javax.swing.
JMenuBar
(implements javax.accessibility.
Accessible
, javax.swing.
MenuElement
)
owltools.ontologyrelease.gui.
OortGuiMenuBar
javax.swing.
JPanel
(implements javax.accessibility.
Accessible
)
org.obolibrary.gui.GuiTools.SizedJPanel
owltools.ontologyrelease.gui.
OortGuiAdvancedPanel
owltools.ontologyrelease.gui.
OortGuiMainPanel
java.awt.
Window
(implements javax.accessibility.
Accessible
)
java.awt.
Frame
(implements java.awt.
MenuContainer
)
javax.swing.
JFrame
(implements javax.accessibility.
Accessible
, javax.swing.
RootPaneContainer
, javax.swing.
WindowConstants
)
owltools.ontologyrelease.gui.
OortGuiMainFrame
owltools.gaf.
CompositeQualifier
owltools.cli.
CopyOfCommandLineInterface
owltools.test.
CycleTest
owltools.ontologyverification.
DefaultOntologyChecks
owltools.gaf.
ExtensionExpression
owltools.test.
FlyTest
owltools.test.
FlyXPTest
owltools.gaf.
GafDocument
owltools.gaf.
GafObjectsBuilder
owltools.gaf.owl.
GAFOWLBridge
owltools.gaf.
GAFParser
owltools.gaf.
GeneAnnotation
owltools.phenolog.
GenePheno
(implements java.lang.
Comparable
<T>)
owltools.phenolog.
GenePhenoTsvParser
owltools.gfx.
GraphicsConfig
owltools.gfx.
GraphicsConfig.RelationConfig
owltools.reasoner.
GraphReasonerFactory
(implements org.semanticweb.owlapi.reasoner.OWLReasonerFactory)
owltools.gfx.
GraphStyle
owltools.idmap.
IDMapHandler
owltools.idmap.
IDMapPairWriter
owltools.gaf.
IdMapping
owltools.phenolog.
Individual
(implements java.lang.
Comparable
<T>)
owltools.phenolog.
IndividualPair
(implements java.lang.
Comparable
<T>)
owltools.
InferenceBuilder
owltools.io.
JSONPrinter
owltools.phenolog.
Main
owltools.mooncat.
Mooncat
owltools.test.
MPClosureTest
owltools.ontologyrelease.
OboOntologyReleaseRunner
owltools.ontologyrelease.
OboOntologyReleaseRunnerGui
owltools.ontologyverification.
OntologyCheckHandler
owltools.ontologyverification.
OntologyCheckRunner
owltools.ontologyrelease.
OntologyMetadata
owltools.ontologyrelease.
OntologyVersionTools
owltools.ontologyrelease.
OortConfiguration
owltools.ontologyrelease.gui.
OortGuiConfiguration
owltools.ontologyrelease.test.
OortConfigurationTest
owltools.graph.
OWLGraphEdge
owltools.gfx.
OWLGraphLayoutNode
(implements uk.ac.ebi.interpro.graphdraw.LayoutNode, uk.ac.ebi.interpro.graphdraw.Node)
owltools.gfx.
OWLGraphLayoutNode.SVGRectangle
owltools.gfx.
OWLGraphLayoutRenderer
owltools.gfx.
OWLGraphvizRenderer
owltools.gfx.
OWLGraphStrokeEdge.SVGEdge
owltools.graph.
OWLGraphUtil
owltools.graph.
OWLGraphWrapper
owltools.graph.
OWLGraphWrapper.Config
owltools.graph.
OWLGraphWrapper.Synonym
(implements owltools.graph.
OWLGraphWrapper.ISynonym
)
owltools.io.
OWLGsonRenderer
owltools.web.
OWLHandler
owltools.sim.
OWLObjectPair
owltools.io.
OWLPrettyPrinter
owltools.io.
OWLPrettyPrinter.LabelProvider
(implements org.semanticweb.owlapi.util.ShortFormProvider)
owltools.graph.
OWLQuantifiedProperty
org.semanticweb.owlapi.reasoner.impl.OWLReasonerBase (implements org.semanticweb.owlapi.reasoner.OWLReasoner)
owltools.reasoner.
ExpressionMaterializingReasoner
(implements owltools.reasoner.
OWLExtendedReasoner
)
owltools.reasoner.
GraphReasoner
(implements owltools.reasoner.
OWLExtendedReasoner
)
owltools.
OWLReasonerRunner
owltools.test.
OWLToolsTestBasics
owltools.test.
AddImportTest
owltools.ontologyrelease.test.
AncestorsTest
owltools.graph.test.
AncestorsTest
owltools.graph.test.
AncestorsTest2
owltools.sim.test.
AsbtractSimEngineTest
owltools.sim.test.
CombinedJaccardConjunctiveSetSimilarityTest
owltools.sim.test.
ConjunctiveSetSimilarityTest
owltools.sim.test.
PhenologSimTest
owltools.sim.test.
SimEngineTest
owltools.sim.test.
SimEngineTest2
owltools.sim.test.
SimEngineTest3
owltools.sim.test.
SimEngineTest4
owltools.gfx.test.
CaroDotTest
owltools.graph.test.
ChainTest
owltools.test.
ChainTestRegulation
owltools.test.
ClosureTestCARO
owltools.graph.test.
DLLikeQueryTest
owltools.gfx.test.
DrawAllCAROTest
owltools.gfx.test.
DrawCAROTest
owltools.gfx.test.
DrawOmmatidiumTest
owltools.test.
FactPPTest
owltools.test.
FlyTutorial
owltools.gaf.test.
GAFInferenceTest
owltools.gaf.test.
GafObjectsBuilderTest
owltools.gaf.owl.test.
GAFOWLBridgeTest
owltools.gaf.test.
GAFParserTest
owltools.test.
GetObjectsTest
owltools.graph.test.
GraphImportsClosureTest
owltools.gfx.test.
ImportTest
owltools.test.
LCSTestCARO
owltools.mooncat.test.
MireotTest2
owltools.mooncat.test.
MireotTest3
owltools.mooncat.test.
MooncatTest
owltools.gfx.test.
MPVizTest
owltools.ontologyverification.
OntologyCheckRunnerTest
owltools.graph.test.
OWLGraphWrapperTest
owltools.io.test.
OWLGsonRendererTest
owltools.graph.test.
PKBTest
owltools.ontologyrelease.test.
ReleaseInferenceTest
owltools.test.
RestrictToELTest
owltools.graph.test.
RetrieveRelationByLabelTest
owltools.test.
TaxonGraphTest
owltools.io.
ParserWrapper
owltools.phenolog.
Pheno
(implements java.lang.
Comparable
<T>)
owltools.phenolog.
PhenologEngine
owltools.phenolog.
PhenoTransitiveClosure
owltools.reasoner.
PlaceholderJcelFactory
(implements org.semanticweb.owlapi.reasoner.OWLReasonerFactory)
owltools.gaf.inference.
Prediction
owltools.profile.
Profiler
org.apache.tools.ant.ProjectComponent (implements java.lang.
Cloneable
)
org.apache.tools.ant.Task
owltools.ontologyrelease.
BuildVersionId
owltools.ontologyrelease.
GetOntologyId
org.apache.tools.ant.taskdefs.Property
owltools.ontologyrelease.
OboProperty
owltools.sim.
Reporter
owltools.gfx.
SampleGraphDraw
owltools.sim.
SimEngine
owltools.sim.
Similarity
owltools.sim.
AsymmetricJaccardSimilarity
owltools.sim.
AvgInformationContentBestMatchesSimilarity
owltools.sim.
AvgInformationContentLCSSimilarity
owltools.sim.
CombinedJaccardConjunctiveSetSimilarity
owltools.sim.
CombinedSimilarity
owltools.sim.
CombinedSimilarity2
owltools.sim.
ConjunctiveSetInformationContentRatioSimilarity
owltools.sim.
ConjunctiveSetSimilarity
owltools.sim.
DescriptionTreeSimilarity
owltools.sim.
DisjunctiveSetSimilarity
owltools.sim.
JaccardBloomSimilarity
owltools.sim.
JaccardSimilarity
owltools.sim.
MaximumInformationContentSimilarity
owltools.sim.
MultiSimilarity
owltools.sim.
OverlapSimilarity
owltools.sim.
SimSearch
owltools.graph.test.
SparqlDLQueryTest
uk.ac.ebi.interpro.graphdraw.StrokeEdge<N> (implements uk.ac.ebi.interpro.graphdraw.LayoutEdge<N>)
owltools.gfx.
OWLGraphStrokeEdge
owltools.io.
TableToAxiomConverter
owltools.io.
TableToAxiomConverter.Config
owltools.gaf.inference.
TaxonConstraintsEngine
java.lang.
Throwable
(implements java.io.
Serializable
)
java.lang.
Exception
owltools.cli.
CommandRunner.OptionException
owltools.ontologyrelease.
OboOntologyReleaseRunnerCheckException
owltools.graph.
SharedLabelException
owltools.sim.
SimEngine.SimilarityAlgorithmException
owltools.gaf.
WithInfo
Interface Hierarchy
owltools.gaf.inference.
AnnotationPredictor
owltools.gaf.
GafParserListener
owltools.io.
GraphReader
owltools.io.
GraphRenderer
owltools.graph.
OWLGraphWrapper.ISynonym
org.semanticweb.owlapi.reasoner.OWLReasoner
owltools.reasoner.
OWLExtendedReasoner
owltools.sim.
SimilarityCalculator
Annotation Type Hierarchy
owltools.ontologyverification.annotations.
AfterReasoning
(implements java.lang.annotation.
Annotation
)
owltools.ontologyverification.annotations.
AfterMireot
(implements java.lang.annotation.
Annotation
)
owltools.ontologyverification.annotations.
AfterLoading
(implements java.lang.annotation.
Annotation
)
owltools.ontologyverification.annotations.
Check
(implements java.lang.annotation.
Annotation
)
Enum Hierarchy
java.lang.
Object
java.lang.
Enum
<E> (implements java.lang.
Comparable
<T>, java.io.
Serializable
)
owltools.gaf.owl.
GAFOWLBridge.Vocab
owltools.ontologyrelease.
OntologyMetadata.MetadataField
owltools.ontologyrelease.
OntologyMetadata.MetadataQualifier
owltools.ontologyrelease.
OortConfiguration.MacroStrategy
owltools.web.
OWLHandler.ResultType
owltools.web.
OWLHandler.Param
owltools.idmap.
IDMappingPIRParser.Types
owltools.gfx.
RelationType
owltools.gfx.
RelationType.Polarity
owltools.graph.
OWLQuantifiedProperty.Quantifier
owltools.ontologyverification.
CheckResult.Status
Overview
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