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Packages that use OWLGraphWrapper | |
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owltools | OWLTools - an OWL API wrapper |
owltools.cli | CLI - Command Line Interface |
owltools.gaf.inference | Perform inference on Gene Associations |
owltools.gaf.owl | |
owltools.gfx | GFX - OWL Graphics and Visualization |
owltools.graph | OWLGraph -- OBO-like Graph Wrapper for OWL Ontologies |
owltools.io | IO - Input/Output |
owltools.mooncat | Mooncat -- Multiple OWL ONtology Catenation |
owltools.ontologyrelease | Oort - OBO Ontology Release Tool (OORT) |
owltools.ontologyverification | |
owltools.sim | OWLSim -- Semantic Similarity over OWL ontologies |
owltools.sim.test | |
owltools.test | |
owltools.web | OWLTools Web Services |
Uses of OWLGraphWrapper in owltools |
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Methods in owltools that return OWLGraphWrapper | |
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static OWLGraphWrapper |
InferenceBuilder.enforceEL(OWLGraphWrapper graph)
Create an ontology with EL as description logic profile. |
OWLGraphWrapper |
InferenceBuilder.getOWLGraphWrapper()
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Methods in owltools with parameters of type OWLGraphWrapper | |
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static OWLGraphWrapper |
InferenceBuilder.enforceEL(OWLGraphWrapper graph)
Create an ontology with EL as description logic profile. |
void |
InferenceBuilder.setOWLGraphWrapper(OWLGraphWrapper g)
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Constructors in owltools with parameters of type OWLGraphWrapper | |
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InferenceBuilder(OWLGraphWrapper graph)
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InferenceBuilder(OWLGraphWrapper graph,
org.semanticweb.owlapi.reasoner.OWLReasonerFactory factory,
boolean enforceEL)
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InferenceBuilder(OWLGraphWrapper graph,
String reasonerName)
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InferenceBuilder(OWLGraphWrapper graph,
String reasonerName,
boolean enforceEL)
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Uses of OWLGraphWrapper in owltools.cli |
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Methods in owltools.cli with parameters of type OWLGraphWrapper | |
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static org.semanticweb.owlapi.model.OWLClass |
CopyOfCommandLineInterface.resolveClass(OWLGraphWrapper g,
String id)
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static org.semanticweb.owlapi.model.OWLObject |
CopyOfCommandLineInterface.resolveEntity(OWLGraphWrapper g,
owltools.cli.CopyOfCommandLineInterface.Opts opts)
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static org.semanticweb.owlapi.model.OWLObject |
CopyOfCommandLineInterface.resolveEntity(OWLGraphWrapper g,
String id)
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static org.semanticweb.owlapi.model.OWLObjectProperty |
CopyOfCommandLineInterface.resolveObjectProperty(OWLGraphWrapper g,
String id)
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Uses of OWLGraphWrapper in owltools.gaf.inference |
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Methods in owltools.gaf.inference that return OWLGraphWrapper | |
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OWLGraphWrapper |
AbstractAnnotationPredictor.getGraph()
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Methods in owltools.gaf.inference with parameters of type OWLGraphWrapper | |
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void |
AbstractAnnotationPredictor.setGraph(OWLGraphWrapper graph)
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Constructors in owltools.gaf.inference with parameters of type OWLGraphWrapper | |
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AbstractAnnotationPredictor(GafDocument gafDocument,
OWLGraphWrapper graph)
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BasicAnnotationPropagator(GafDocument gafDocument,
OWLGraphWrapper graph)
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CompositionalClassPredictor(GafDocument gafDocument,
OWLGraphWrapper graph)
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TaxonConstraintsEngine(OWLGraphWrapper graph)
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Uses of OWLGraphWrapper in owltools.gaf.owl |
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Constructors in owltools.gaf.owl with parameters of type OWLGraphWrapper | |
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GAFOWLBridge(OWLGraphWrapper g)
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GAFOWLBridge(OWLGraphWrapper g,
org.semanticweb.owlapi.model.OWLOntology tgtOnt)
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Uses of OWLGraphWrapper in owltools.gfx |
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Fields in owltools.gfx declared as OWLGraphWrapper | |
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protected OWLGraphWrapper |
OWLGraphLayoutRenderer.owlGraphWrapper
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Constructors in owltools.gfx with parameters of type OWLGraphWrapper | |
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OWLGraphLayoutNode(OWLGraphWrapper owlGraphWrapper,
org.semanticweb.owlapi.model.OWLObject owlObject)
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OWLGraphLayoutNode(OWLGraphWrapper owlGraphWrapper,
org.semanticweb.owlapi.model.OWLObject owlObject,
GraphStyle style)
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OWLGraphLayoutRenderer(OWLGraphWrapper owlGraphWrapper)
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OWLGraphvizRenderer(OWLGraphWrapper owlGraphWrapper)
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Uses of OWLGraphWrapper in owltools.graph |
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Methods in owltools.graph with parameters of type OWLGraphWrapper | |
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static Set<org.semanticweb.owlapi.model.OWLObject> |
OWLGraphUtil.findCommonAncestors(OWLGraphWrapper g,
org.semanticweb.owlapi.model.OWLObject x,
org.semanticweb.owlapi.model.OWLObject y)
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static Set<OWLGraphEdge> |
OWLGraphUtil.findCommonSubsumersAsEdges(OWLGraphWrapper g,
org.semanticweb.owlapi.model.OWLObject x,
org.semanticweb.owlapi.model.OWLObject y)
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static Set<org.semanticweb.owlapi.model.OWLObject> |
OWLGraphUtil.findLeastCommonAncestors(OWLGraphWrapper g,
org.semanticweb.owlapi.model.OWLObject x,
org.semanticweb.owlapi.model.OWLObject y)
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static Set<OWLGraphEdge> |
OWLGraphUtil.findLeastCommonSubsumersAsEdges(OWLGraphWrapper g,
org.semanticweb.owlapi.model.OWLObject x,
org.semanticweb.owlapi.model.OWLObject y)
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Uses of OWLGraphWrapper in owltools.io |
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Fields in owltools.io declared as OWLGraphWrapper | |
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protected OWLGraphWrapper |
AbstractClosureRenderer.graph
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OWLGraphWrapper |
TableToAxiomConverter.graph
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Methods in owltools.io that return OWLGraphWrapper | |
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OWLGraphWrapper |
ParserWrapper.parseToOWLGraph(String iriString)
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OWLGraphWrapper |
ParserWrapper.parseToOWLGraph(String iriString,
boolean isMergeImportClosure)
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Methods in owltools.io with parameters of type OWLGraphWrapper | |
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void |
TableToAxiomConverter.buildClassMap(OWLGraphWrapper g)
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void |
CompactGraphClosureRenderer.render(OWLGraphWrapper g)
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void |
AbstractClosureRenderer.render(OWLGraphWrapper g)
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void |
GraphRenderer.render(OWLGraphWrapper g)
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Constructors in owltools.io with parameters of type OWLGraphWrapper | |
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AbstractClosureReader(OWLGraphWrapper g)
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CompactGraphClosureReader(OWLGraphWrapper g)
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OWLPrettyPrinter.LabelProvider(OWLGraphWrapper graph)
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OWLPrettyPrinter(OWLGraphWrapper graph)
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TableToAxiomConverter(OWLGraphWrapper graph)
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Uses of OWLGraphWrapper in owltools.mooncat |
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Methods in owltools.mooncat that return OWLGraphWrapper | |
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OWLGraphWrapper |
Mooncat.getGraph()
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Methods in owltools.mooncat with parameters of type OWLGraphWrapper | |
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void |
Mooncat.setGraph(OWLGraphWrapper graph)
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Constructors in owltools.mooncat with parameters of type OWLGraphWrapper | |
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Mooncat(OWLGraphWrapper g)
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Uses of OWLGraphWrapper in owltools.ontologyrelease |
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Methods in owltools.ontologyrelease with parameters of type OWLGraphWrapper | |
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void |
OntologyMetadata.generate(OWLGraphWrapper g)
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Uses of OWLGraphWrapper in owltools.ontologyverification |
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Methods in owltools.ontologyverification with parameters of type OWLGraphWrapper | |
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void |
OntologyCheckHandler.afterLoading(OWLGraphWrapper owlGraphWrapper)
Run tests for the ontology after loading it. |
void |
OntologyCheckHandler.afterMireot(OWLGraphWrapper owlGraphWrapper)
Run tests for the ontology after mireoting. |
void |
OntologyCheckHandler.afterReasoning(OWLGraphWrapper owlGraphWrapper)
Run tests for the ontology after reasoning. |
CheckResult |
DefaultOntologyChecks.selfReferenceInDefinition(OWLGraphWrapper owlGraphWrapper)
Check, whether the class is defined using the class itself. |
Uses of OWLGraphWrapper in owltools.sim |
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Fields in owltools.sim declared as OWLGraphWrapper | |
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protected OWLGraphWrapper |
SimEngine.graph
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Methods in owltools.sim that return OWLGraphWrapper | |
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OWLGraphWrapper |
SimilarityCalculator.getGraph()
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OWLGraphWrapper |
SimEngine.getGraph()
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Methods in owltools.sim with parameters of type OWLGraphWrapper | |
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void |
SimilarityCalculator.setGraph(OWLGraphWrapper graph)
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void |
SimEngine.setGraph(OWLGraphWrapper graph)
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Constructors in owltools.sim with parameters of type OWLGraphWrapper | |
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Reporter(OWLGraphWrapper graph)
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Reporter(PrintStream printStream,
OWLGraphWrapper graph)
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SimEngine(OWLGraphWrapper wrapper)
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Uses of OWLGraphWrapper in owltools.sim.test |
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Methods in owltools.sim.test that return OWLGraphWrapper | |
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protected OWLGraphWrapper |
AsbtractSimEngineTest.getOntologyWrapper(String file)
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protected OWLGraphWrapper |
AsbtractSimEngineTest.getOntologyWrapperFromURL(String url)
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Methods in owltools.sim.test with parameters of type OWLGraphWrapper | |
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protected void |
AsbtractSimEngineTest.run(OWLGraphWrapper wrapper,
Similarity sa,
org.semanticweb.owlapi.model.OWLObject a,
org.semanticweb.owlapi.model.OWLObject b)
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Uses of OWLGraphWrapper in owltools.test |
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Methods in owltools.test that return OWLGraphWrapper | |
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protected OWLGraphWrapper |
OWLToolsTestBasics.getGraph(String filename)
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Uses of OWLGraphWrapper in owltools.web |
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Constructors in owltools.web with parameters of type OWLGraphWrapper | |
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OWLHandler(OWLServer owlserver,
OWLGraphWrapper graph,
javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response)
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OWLServer(OWLGraphWrapper g)
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