owltools.idmap
Class IDMappingPIRParser
java.lang.Object
owltools.idmap.AbstractMappingParser
owltools.idmap.IDMappingPIRParser
public class IDMappingPIRParser
- extends AbstractMappingParser
Parses the IDMapping file available here:
ftp://ftp.pir.georgetown.edu/databases/idmapping/idmapping.tb.gz
- Author:
- cjm
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
COLS
public static IDMappingPIRParser.Types[] COLS
COL_SUBSET
public IDMappingPIRParser.Types[] COL_SUBSET
colIxSubset
public Set<Integer> colIxSubset
typeIxMap
public Map<IDMappingPIRParser.Types,Integer> typeIxMap
filterWhere
public Map<Integer,Set<String>> filterWhere
handler
public IDMapHandler handler
IDMappingPIRParser
public IDMappingPIRParser()
next
public boolean next()
throws IOException
- Throws:
IOException
process
public boolean process(String[] colVals)
parse
public void parse(Reader reader)
throws IOException
- Specified by:
parse
in class AbstractMappingParser
- Throws:
IOException
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