Uses of Class
owltools.graph.OWLGraphWrapper

Packages that use OWLGraphWrapper
owltools OWLTools - an OWL API wrapper 
owltools.cli CLI - Command Line Interface 
owltools.gaf.inference Perform inference on Gene Associations 
owltools.gaf.owl   
owltools.gfx GFX - OWL Graphics and Visualization 
owltools.graph OWLGraph -- OBO-like Graph Wrapper for OWL Ontologies 
owltools.io IO - Input/Output 
owltools.mooncat Mooncat -- Multiple OWL ONtology Catenation 
owltools.ontologyrelease Oort - OBO Ontology Release Tool (OORT) 
owltools.ontologyrelease.reports   
owltools.ontologyverification   
owltools.sim OWLSim -- Semantic Similarity over OWL ontologies 
owltools.sim.test   
owltools.solrj   
owltools.test   
owltools.web OWLTools Web Services 
 

Uses of OWLGraphWrapper in owltools
 

Methods in owltools that return OWLGraphWrapper
static OWLGraphWrapper InferenceBuilder.enforceEL(OWLGraphWrapper graph)
          Create an ontology with EL as description logic profile.
 OWLGraphWrapper InferenceBuilder.getOWLGraphWrapper()
           
 

Methods in owltools with parameters of type OWLGraphWrapper
static OWLGraphWrapper InferenceBuilder.enforceEL(OWLGraphWrapper graph)
          Create an ontology with EL as description logic profile.
 void InferenceBuilder.setOWLGraphWrapper(OWLGraphWrapper g)
           
 

Constructors in owltools with parameters of type OWLGraphWrapper
InferenceBuilder(OWLGraphWrapper graph)
           
InferenceBuilder(OWLGraphWrapper graph, org.semanticweb.owlapi.reasoner.OWLReasonerFactory factory, boolean enforceEL)
           
InferenceBuilder(OWLGraphWrapper graph, String reasonerName)
           
InferenceBuilder(OWLGraphWrapper graph, String reasonerName, boolean enforceEL)
           
 

Uses of OWLGraphWrapper in owltools.cli
 

Methods in owltools.cli with parameters of type OWLGraphWrapper
static org.semanticweb.owlapi.model.OWLClass CopyOfCommandLineInterface.resolveClass(OWLGraphWrapper g, String id)
           
static org.semanticweb.owlapi.model.OWLObject CopyOfCommandLineInterface.resolveEntity(OWLGraphWrapper g, owltools.cli.CopyOfCommandLineInterface.Opts opts)
           
static org.semanticweb.owlapi.model.OWLObject CopyOfCommandLineInterface.resolveEntity(OWLGraphWrapper g, String id)
           
static org.semanticweb.owlapi.model.OWLObjectProperty CopyOfCommandLineInterface.resolveObjectProperty(OWLGraphWrapper g, String id)
           
 

Uses of OWLGraphWrapper in owltools.gaf.inference
 

Methods in owltools.gaf.inference that return OWLGraphWrapper
 OWLGraphWrapper AbstractAnnotationPredictor.getGraph()
           
 

Methods in owltools.gaf.inference with parameters of type OWLGraphWrapper
 void AbstractAnnotationPredictor.setGraph(OWLGraphWrapper graph)
           
 

Constructors in owltools.gaf.inference with parameters of type OWLGraphWrapper
AbstractAnnotationPredictor(GafDocument gafDocument, OWLGraphWrapper graph)
           
BasicAnnotationPropagator(GafDocument gafDocument, OWLGraphWrapper graph)
           
CompositionalClassPredictor(GafDocument gafDocument, OWLGraphWrapper graph)
           
TaxonConstraintsEngine(OWLGraphWrapper graph)
           
 

Uses of OWLGraphWrapper in owltools.gaf.owl
 

Constructors in owltools.gaf.owl with parameters of type OWLGraphWrapper
GAFOWLBridge(OWLGraphWrapper g)
           
GAFOWLBridge(OWLGraphWrapper g, org.semanticweb.owlapi.model.OWLOntology tgtOnt)
           
 

Uses of OWLGraphWrapper in owltools.gfx
 

Fields in owltools.gfx declared as OWLGraphWrapper
protected  OWLGraphWrapper OWLGraphLayoutRenderer.owlGraphWrapper
           
 

Constructors in owltools.gfx with parameters of type OWLGraphWrapper
OWLGraphLayoutNode(OWLGraphWrapper owlGraphWrapper, org.semanticweb.owlapi.model.OWLObject owlObject)
           
OWLGraphLayoutNode(OWLGraphWrapper owlGraphWrapper, org.semanticweb.owlapi.model.OWLObject owlObject, GraphStyle style)
           
OWLGraphLayoutRenderer(OWLGraphWrapper owlGraphWrapper)
           
OWLGraphvizRenderer(OWLGraphWrapper owlGraphWrapper)
           
 

Uses of OWLGraphWrapper in owltools.graph
 

Methods in owltools.graph with parameters of type OWLGraphWrapper
static Set<org.semanticweb.owlapi.model.OWLObject> OWLGraphUtil.findCommonAncestors(OWLGraphWrapper g, org.semanticweb.owlapi.model.OWLObject x, org.semanticweb.owlapi.model.OWLObject y)
           
static Set<OWLGraphEdge> OWLGraphUtil.findCommonSubsumersAsEdges(OWLGraphWrapper g, org.semanticweb.owlapi.model.OWLObject x, org.semanticweb.owlapi.model.OWLObject y)
           
static Set<org.semanticweb.owlapi.model.OWLObject> OWLGraphUtil.findLeastCommonAncestors(OWLGraphWrapper g, org.semanticweb.owlapi.model.OWLObject x, org.semanticweb.owlapi.model.OWLObject y)
           
static Set<OWLGraphEdge> OWLGraphUtil.findLeastCommonSubsumersAsEdges(OWLGraphWrapper g, org.semanticweb.owlapi.model.OWLObject x, org.semanticweb.owlapi.model.OWLObject y)
           
 

Uses of OWLGraphWrapper in owltools.io
 

Fields in owltools.io declared as OWLGraphWrapper
protected  OWLGraphWrapper AbstractClosureRenderer.graph
           
 OWLGraphWrapper TableToAxiomConverter.graph
           
 

Methods in owltools.io that return OWLGraphWrapper
 OWLGraphWrapper ParserWrapper.parseToOWLGraph(String iriString)
           
 OWLGraphWrapper ParserWrapper.parseToOWLGraph(String iriString, boolean isMergeImportClosure)
           
 

Methods in owltools.io with parameters of type OWLGraphWrapper
 void TableToAxiomConverter.buildClassMap(OWLGraphWrapper g)
           
 void CompactGraphClosureRenderer.render(OWLGraphWrapper g)
           
 void AbstractClosureRenderer.render(OWLGraphWrapper g)
           
 void GraphRenderer.render(OWLGraphWrapper g)
           
 

Constructors in owltools.io with parameters of type OWLGraphWrapper
AbstractClosureReader(OWLGraphWrapper g)
           
CompactGraphClosureReader(OWLGraphWrapper g)
           
OWLPrettyPrinter.LabelProvider(OWLGraphWrapper graph)
           
OWLPrettyPrinter(OWLGraphWrapper graph)
           
TableToAxiomConverter(OWLGraphWrapper graph)
           
 

Uses of OWLGraphWrapper in owltools.mooncat
 

Methods in owltools.mooncat that return OWLGraphWrapper
 OWLGraphWrapper Mooncat.getGraph()
           
 

Methods in owltools.mooncat with parameters of type OWLGraphWrapper
 void Mooncat.setGraph(OWLGraphWrapper graph)
           
 

Constructors in owltools.mooncat with parameters of type OWLGraphWrapper
Mooncat(OWLGraphWrapper g)
           
 

Uses of OWLGraphWrapper in owltools.ontologyrelease
 

Methods in owltools.ontologyrelease with parameters of type OWLGraphWrapper
 void OntologyMetadata.generate(OWLGraphWrapper g)
           
 

Uses of OWLGraphWrapper in owltools.ontologyrelease.reports
 

Methods in owltools.ontologyrelease.reports with parameters of type OWLGraphWrapper
 void OntologyReportGenerator.OntologyReport.end(PrintWriter writer, OWLGraphWrapper graph)
          End the report.
 void OntologyReportGenerator.AbstractReport.end(PrintWriter writer, OWLGraphWrapper graph)
           
 void OntologyReportGenerator.generateReports(OWLGraphWrapper graph)
          Generate the internal reports for a given ontology.
 void ObsoletesAllReport.handleTerm(PrintWriter writer, org.semanticweb.owlapi.model.OWLClass owlClass, OWLGraphWrapper graph)
           
 void OBOTermsAltIdsReport.handleTerm(PrintWriter writer, org.semanticweb.owlapi.model.OWLClass owlClass, OWLGraphWrapper graph)
           
 void OBOTermsIdsObsoleteReport.handleTerm(PrintWriter writer, org.semanticweb.owlapi.model.OWLClass owlClass, OWLGraphWrapper graph)
           
 void OntologyReportGenerator.OntologyReport.handleTerm(PrintWriter writer, org.semanticweb.owlapi.model.OWLClass owlClass, OWLGraphWrapper graph)
          Handle an OWLObject during the report.
 void ObsoletesInExactReport.handleTerm(PrintWriter writer, org.semanticweb.owlapi.model.OWLClass owlClass, OWLGraphWrapper graph)
           
 void ObsoletesExactReport.handleTerm(PrintWriter writer, org.semanticweb.owlapi.model.OWLClass owlClass, OWLGraphWrapper graph)
           
 void OBOTermsIdsReport.handleTerm(PrintWriter writer, org.semanticweb.owlapi.model.OWLClass owlClass, OWLGraphWrapper graph)
           
 void OntologyReportGenerator.OntologyReport.start(PrintWriter writer, OWLGraphWrapper graph)
          Start the report.
 void OntologyReportGenerator.AbstractReport.start(PrintWriter writer, OWLGraphWrapper graph)
           
 

Constructors in owltools.ontologyrelease.reports with parameters of type OWLGraphWrapper
OBOTermsAltIdsReport(OWLGraphWrapper graph)
           
OBOTermsIdsObsoleteReport(OWLGraphWrapper graph)
           
OBOTermsIdsReport(OWLGraphWrapper graph)
           
ObsoletesAllReport(OWLGraphWrapper graph)
           
ObsoletesExactReport(OWLGraphWrapper graph)
           
ObsoletesInExactReport(OWLGraphWrapper graph)
           
 

Uses of OWLGraphWrapper in owltools.ontologyverification
 

Methods in owltools.ontologyverification with parameters of type OWLGraphWrapper
 void OntologyCheckHandler.afterLoading(OWLGraphWrapper owlGraphWrapper)
          Run tests for the ontology after loading it.
 void OntologyCheckHandler.afterMireot(OWLGraphWrapper owlGraphWrapper)
          Run tests for the ontology after mireoting.
 void OntologyCheckHandler.afterReasoning(OWLGraphWrapper owlGraphWrapper)
          Run tests for the ontology after reasoning.
 CheckResult DefaultOntologyChecks.selfReferenceInDefinition(OWLGraphWrapper owlGraphWrapper)
          Check, whether the class is defined using the class itself.
 

Uses of OWLGraphWrapper in owltools.sim
 

Fields in owltools.sim declared as OWLGraphWrapper
protected  OWLGraphWrapper SimEngine.graph
           
 

Methods in owltools.sim that return OWLGraphWrapper
 OWLGraphWrapper SimilarityCalculator.getGraph()
           
 OWLGraphWrapper SimEngine.getGraph()
           
 

Methods in owltools.sim with parameters of type OWLGraphWrapper
 void SimilarityCalculator.setGraph(OWLGraphWrapper graph)
           
 void SimEngine.setGraph(OWLGraphWrapper graph)
           
 

Constructors in owltools.sim with parameters of type OWLGraphWrapper
Reporter(OWLGraphWrapper graph)
           
Reporter(PrintStream printStream, OWLGraphWrapper graph)
           
SimEngine(OWLGraphWrapper wrapper)
           
 

Uses of OWLGraphWrapper in owltools.sim.test
 

Methods in owltools.sim.test that return OWLGraphWrapper
protected  OWLGraphWrapper AsbtractSimEngineTest.getOntologyWrapper(String file)
           
protected  OWLGraphWrapper AsbtractSimEngineTest.getOntologyWrapperFromURL(String url)
           
 

Methods in owltools.sim.test with parameters of type OWLGraphWrapper
protected  void AsbtractSimEngineTest.run(OWLGraphWrapper wrapper, Similarity sa, org.semanticweb.owlapi.model.OWLObject a, org.semanticweb.owlapi.model.OWLObject b)
           
 

Uses of OWLGraphWrapper in owltools.solrj
 

Fields in owltools.solrj declared as OWLGraphWrapper
protected  OWLGraphWrapper AbstractSolrLoader.graph
           
 

Methods in owltools.solrj that return OWLGraphWrapper
 OWLGraphWrapper AbstractSolrLoader.getGraph()
           
 

Methods in owltools.solrj with parameters of type OWLGraphWrapper
 void AbstractSolrLoader.setGraph(OWLGraphWrapper graph)
           
 

Uses of OWLGraphWrapper in owltools.test
 

Methods in owltools.test that return OWLGraphWrapper
protected  OWLGraphWrapper OWLToolsTestBasics.getGraph(String filename)
           
 

Uses of OWLGraphWrapper in owltools.web
 

Constructors in owltools.web with parameters of type OWLGraphWrapper
OWLHandler(OWLServer owlserver, OWLGraphWrapper graph, javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response)
           
OWLServer(OWLGraphWrapper g)
           
 



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