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Packages that use GafDocument | |
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owltools.gaf | Processing of GO Gene Association Files |
owltools.gaf.inference | Perform inference on Gene Associations |
owltools.gaf.owl | |
owltools.solrj |
Uses of GafDocument in owltools.gaf |
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Fields in owltools.gaf declared as GafDocument | |
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protected GafDocument |
GeneAnnotation.gafDocumentObject
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Methods in owltools.gaf that return GafDocument | |
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GafDocument |
GafObjectsBuilder.buildDocument(File gafFilePath)
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GafDocument |
GafObjectsBuilder.buildDocument(Reader reader,
String docId,
String path)
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GafDocument |
GafObjectsBuilder.buildDocument(String gafFile)
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GafDocument |
GafObjectsBuilder.buildDocument(String fileName,
String docId,
String path)
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GafDocument |
GafObjectsBuilder.getGafDocument()
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GafDocument |
GafObjectsBuilder.getNextSplitDocument()
when this variable reaches at splitSize then the algorithm in the getNextSplitDocument method stops calling next method of the GafParser and return the GafDocument object build with the number of rows |
Uses of GafDocument in owltools.gaf.inference |
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Methods in owltools.gaf.inference that return GafDocument | |
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GafDocument |
AbstractAnnotationPredictor.getGafDocument()
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Methods in owltools.gaf.inference with parameters of type GafDocument | |
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void |
AbstractAnnotationPredictor.setGafDocument(GafDocument gafDocument)
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Constructors in owltools.gaf.inference with parameters of type GafDocument | |
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AbstractAnnotationPredictor(GafDocument gafDocument,
OWLGraphWrapper graph)
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BasicAnnotationPropagator(GafDocument gafDocument,
OWLGraphWrapper graph)
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CompositionalClassPredictor(GafDocument gafDocument,
OWLGraphWrapper graph)
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Uses of GafDocument in owltools.gaf.owl |
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Methods in owltools.gaf.owl with parameters of type GafDocument | |
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org.semanticweb.owlapi.model.OWLOntology |
GAFOWLBridge.translate(GafDocument gafdoc)
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Uses of GafDocument in owltools.solrj |
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Methods in owltools.solrj that return GafDocument | |
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GafDocument |
GafSolrDocumentLoader.getGafDocument()
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Methods in owltools.solrj with parameters of type GafDocument | |
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void |
GafSolrDocumentLoader.setGafDocument(GafDocument gafDocument)
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