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AbstractAnnotationPredictor
AbstractClosureReader
AbstractClosureRenderer
AbstractMappingParser
AbstractSolrLoader
AddImportTest
AfterLoading
AfterMireot
AfterReasoning
AncestorsTest
AncestorsTest
AncestorsTest2
AnnotationPredictor
AnnotationSource
AsbtractSimEngineTest
AsymmetricJaccardSimilarity
Attribute
AvgInformationContentBestMatchesSimilarity
AvgInformationContentLCSSimilarity
BasicAnnotationPropagator
Bioentity
BloomFilter
BuildVersionId
CaroDotTest
ChadoGraphClosureRenderer
ChainTest
ChainTestRegulation
Check
CheckResult
CheckResult.Status
ClosureTestCARO
CombinedJaccardConjunctiveSetSimilarity
CombinedJaccardConjunctiveSetSimilarityTest
CombinedSimilarity
CombinedSimilarity2
CommandLineInterface
CommandRunner
CompactGraphClosureReader
CompactGraphClosureRenderer
CompositeQualifier
CompositionalClassPredictor
ConjunctiveSetInformationContentRatioSimilarity
ConjunctiveSetSimilarity
ConjunctiveSetSimilarityTest
CopyOfCommandLineInterface
CycleTest
DefaultOntologyChecks
DescriptionTreeSimilarity
DisjunctiveSetSimilarity
DLLikeQueryTest
DrawAllCAROTest
DrawCAROTest
DrawOmmatidiumTest
DuplicateDefinitionMooncatTest
ExpressionMaterializingReasoner
ExtensionExpression
External2GoReports
External2GoReports.External2GoKegg
External2GoReports.External2GoMetaCyc
External2GoReports.External2GoReactome
External2GoReports.External2GoResid
External2GoReports.External2GoRhea
External2GoReports.External2GoUmBbdEnzymeId
External2GoReports.External2GoUmBbdPathwayId
External2GoReports.External2GoUmBbdReactionId
External2GoReports.External2GoWikipedia
FlyTest
FlyTutorial
FlyXPTest
GafDocument
GAFInferenceTest
GafObjectsBuilder
GafObjectsBuilderTest
GAFOWLBridge
GAFOWLBridge.Vocab
GAFOWLBridgeTest
GAFParser
GafParserListener
GAFParserTest
GafSolrDocumentLoader
GeneAnnotation
GeneOntologyReports
GenePheno
GenePhenoTsvParser
GetObjectsTest
GetOntologyId
GraphClosureRenderer
GraphicsConfig
GraphImportsClosureTest
GraphReader
GraphReasoner
GraphReasonerFactory
GraphRenderer
GraphStyle
IDMapHandler
IDMapPairWriter
IdMapping
IDMappingPIRParser
IDMappingPIRParser.Types
ImportPropertyMooncatTest
ImportTest
Individual
IndividualPair
InferenceBuilder
JaccardBloomSimilarity
JaccardSimilarity
JSONPrinter
LCSTestCARO
Main
MaximumInformationContentSimilarity
MireotTest2
MireotTest3
Mooncat
MooncatTest
MPClosureTest
MPVizTest
MultiSimilarity
OboOntologyReleaseRunner
OboOntologyReleaseRunnerCheckException
OboOntologyReleaseRunnerGui
OboProperty
OBOTermsAltIdsReport
OBOTermsIdsObsoleteReport
OBOTermsIdsReport
ObsoletesAllReport
ObsoletesExactReport
ObsoletesInExactReport
OntologyCheckHandler
OntologyCheckRunner
OntologyCheckRunnerTest
OntologyMetadata
OntologyMetadata.MetadataField
OntologyMetadata.MetadataQualifier
OntologyMetaDataTools
OntologyMetaDataTools.AnnotationCardinalityConfictHandler
OntologyMetaDataTools.AnnotationCardinalityException
OntologyReportGenerator
OntologyReportGenerator.AbstractReport
OntologyReportGenerator.OntologyReport
OntologySolrLoader
OntologyVersionTools
OortConfiguration
OortConfiguration.MacroStrategy
OortConfigurationTest
OortGuiAdvancedPanel
OortGuiConfiguration
OortGuiMainFrame
OortGuiMainPanel
OortGuiMenuBar
OverlapSimilarity
OWLExtendedReasoner
OWLGraphEdge
OWLGraphLayoutNode
OWLGraphLayoutRenderer
OWLGraphStrokeEdge
OWLGraphUtil
OWLGraphvizRenderer
OWLGraphWrapper
OWLGraphWrapper.ISynonym
OWLGraphWrapper.Synonym
OWLGraphWrapperTest
OWLGsonRenderer
OWLGsonRendererTest
OWLHandler
OWLHandler.Param
OWLHandler.ResultType
OWLObjectPair
OWLPrettyPrinter
OWLQuantifiedProperty
OWLQuantifiedProperty.Quantifier
OWLReasonerRunner
OWLServer
OWLToolsTestBasics
ParserWrapper
Pheno
PhenologEngine
PhenologSimTest
PhenoTransitiveClosure
PKBTest
PlaceholderJcelFactory
Prediction
Profiler
RelationType
RelationType.Polarity
ReleaseInferenceTest
Reporter
RestrictToELTest
RetrieveRelationByLabelTest
SampleGraphDraw
SharedLabelException
SimEngine
SimEngineTest
SimEngineTest2
SimEngineTest3
SimEngineTest4
Similarity
SimilarityCalculator
SimSearch
SparqlDLQueryTest
SubsetDefMooncatTest
TableToAxiomConverter
TaxonConstraintsEngine
TaxonGraphTest
UniProtIDMapParser
WithInfo