owltools.phenolog
Class PhenoTransitiveClosure

java.lang.Object
  extended by owltools.phenolog.PhenoTransitiveClosure

public class PhenoTransitiveClosure
extends Object

Author:
beladia

Constructor Summary
PhenoTransitiveClosure()
           
 
Method Summary
 HashMap<String,Pheno> gethmp()
           
 HashMap<String,IndividualPair> gethmpair()
           
 HashSet<Pheno> gethsp()
           
 String getobolink()
           
 String getprefix()
           
 HashSet<Pheno> performtransiviteclosure()
           
 HashSet<Pheno> performtransiviteclosure(String obolink, String prefix, HashSet<Pheno> hsp, HashMap<String,Pheno> hmp, HashMap<String,IndividualPair> hmpair)
           
 void sethmp(HashMap<String,Pheno> hmp)
           
 void sethmpair(HashMap<String,IndividualPair> hmpair)
           
 void sethsp(HashSet<Pheno> hsp)
           
 void setobolink(String obolink)
           
 void setprefix(String prefix)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

PhenoTransitiveClosure

public PhenoTransitiveClosure()
Method Detail

getobolink

public String getobolink()

getprefix

public String getprefix()

gethsp

public HashSet<Pheno> gethsp()

gethmp

public HashMap<String,Pheno> gethmp()

gethmpair

public HashMap<String,IndividualPair> gethmpair()

setobolink

public void setobolink(String obolink)

setprefix

public void setprefix(String prefix)

sethsp

public void sethsp(HashSet<Pheno> hsp)

sethmp

public void sethmp(HashMap<String,Pheno> hmp)

sethmpair

public void sethmpair(HashMap<String,IndividualPair> hmpair)

performtransiviteclosure

public HashSet<Pheno> performtransiviteclosure()

performtransiviteclosure

public HashSet<Pheno> performtransiviteclosure(String obolink,
                                               String prefix,
                                               HashSet<Pheno> hsp,
                                               HashMap<String,Pheno> hmp,
                                               HashMap<String,IndividualPair> hmpair)


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