Uses of Class
owltools.graph.OWLGraphEdge

Packages that use OWLGraphEdge
owltools.gaf.inference Perform inference on Gene Associations 
owltools.gfx GFX - OWL Graphics and Visualization 
owltools.graph OWLGraph -- OBO-like Graph Wrapper for OWL Ontologies 
owltools.io IO - Input/Output 
owltools.sim OWLSim -- Semantic Similarity over OWL ontologies 
 

Uses of OWLGraphEdge in owltools.gaf.inference
 

Method parameters in owltools.gaf.inference with type arguments of type OWLGraphEdge
 boolean TaxonConstraintsEngine.isClassApplicable(org.semanticweb.owlapi.model.OWLClass c, org.semanticweb.owlapi.model.OWLClass testTax, Set<OWLGraphEdge> testClsEdges, Set<org.semanticweb.owlapi.model.OWLObject> taxAncs)
           
 

Uses of OWLGraphEdge in owltools.gfx
 

Methods in owltools.gfx with parameters of type OWLGraphEdge
 void OWLGraphLayoutRenderer.addEdge(OWLGraphEdge e)
          Adds an edge to the graph.
 OWLGraphStrokeEdge OWLGraphLayoutRenderer.makeEdge(OWLGraphEdge e)
          Make a layout edge from a OWLGraphEdge make private?
 

Constructors in owltools.gfx with parameters of type OWLGraphEdge
OWLGraphStrokeEdge(OWLGraphLayoutNode parent, OWLGraphLayoutNode child, OWLGraphEdge oge)
           
 

Uses of OWLGraphEdge in owltools.graph
 

Fields in owltools.graph with type parameters of type OWLGraphEdge
 Map<org.semanticweb.owlapi.model.OWLObject,Set<OWLGraphEdge>> OWLGraphWrapper.inferredEdgeBySource
           
 

Methods in owltools.graph that return OWLGraphEdge
 OWLGraphEdge OWLGraphWrapper.combineEdgePair(org.semanticweb.owlapi.model.OWLObject s, OWLGraphEdge ne, OWLGraphEdge extEdge, int nextDist)
          Composes two graph edges into a new edge, using axioms in the ontology to determine the correct composition For example, Edge(x,SUBCLASS_OF,y) * Edge(y,SUBCLASS_OF,z) yields Edge(x,SUBCLASS_OF,z) Note that property chains of length>2 are currently ignored
 

Methods in owltools.graph that return types with arguments of type OWLGraphEdge
static Set<OWLGraphEdge> OWLGraphUtil.findCommonSubsumersAsEdges(OWLGraphWrapper g, org.semanticweb.owlapi.model.OWLObject x, org.semanticweb.owlapi.model.OWLObject y)
           
static Set<OWLGraphEdge> OWLGraphUtil.findLeastCommonSubsumersAsEdges(OWLGraphWrapper g, org.semanticweb.owlapi.model.OWLObject x, org.semanticweb.owlapi.model.OWLObject y)
           
 Set<OWLGraphEdge> OWLGraphWrapper.getEdgesBetween(org.semanticweb.owlapi.model.OWLObject s, org.semanticweb.owlapi.model.OWLObject t)
           
 Set<OWLGraphEdge> OWLGraphWrapper.getIncomingEdges(org.semanticweb.owlapi.model.OWLObject t)
           
 Set<OWLGraphEdge> OWLGraphWrapper.getIncomingEdgesClosure(org.semanticweb.owlapi.model.OWLObject t)
          gets all inferred edges coming in to the target edge for every s, if t is reachable from s, then include the inferred edge between s and t.
 Set<OWLGraphEdge> OWLGraphWrapper.getInstanceChainsFromClosure(org.semanticweb.owlapi.model.OWLClass c)
          Finds all edges between an instance i and he given class c.
 Set<OWLGraphEdge> OWLGraphWrapper.getOutgoingEdges(org.semanticweb.owlapi.model.OWLObject cls)
          retrieves direct edges from a source to the direct **named** target e.g.
 Set<OWLGraphEdge> OWLGraphWrapper.getOutgoingEdges(org.semanticweb.owlapi.model.OWLObject obj, boolean isClosure, boolean isReflexive)
           
 Set<OWLGraphEdge> OWLGraphWrapper.getOutgoingEdgesClosure(org.semanticweb.owlapi.model.OWLObject s)
          Retrieves the graph closure originating from source.
 Set<OWLGraphEdge> OWLGraphWrapper.getOutgoingEdgesClosureReflexive(org.semanticweb.owlapi.model.OWLObject s)
          as getOutgoingEdgesClosure(s), but also includes an identity edge
 Set<OWLGraphEdge> OWLGraphWrapper.getPrimitiveOutgoingEdges(org.semanticweb.owlapi.model.OWLObject s)
          primitive edges connect any combination of named objects and expressions e.g.
 

Methods in owltools.graph with parameters of type OWLGraphEdge
 OWLGraphEdge OWLGraphWrapper.combineEdgePair(org.semanticweb.owlapi.model.OWLObject s, OWLGraphEdge ne, OWLGraphEdge extEdge, int nextDist)
          Composes two graph edges into a new edge, using axioms in the ontology to determine the correct composition For example, Edge(x,SUBCLASS_OF,y) * Edge(y,SUBCLASS_OF,z) yields Edge(x,SUBCLASS_OF,z) Note that property chains of length>2 are currently ignored
 org.semanticweb.owlapi.model.OWLObject OWLGraphWrapper.edgeToTargetExpression(OWLGraphEdge e)
          pack/translate an edge (either asserted or a graph closure edge) into an OWL class expression according to the OWLGraph to OWLOntology translation rules.
 Set<org.semanticweb.owlapi.model.OWLObject> OWLGraphWrapper.queryDescendants(OWLGraphEdge e)
           
 

Uses of OWLGraphEdge in owltools.io
 

Methods in owltools.io with parameters of type OWLGraphEdge
 Object OWLGsonRenderer.convert(OWLGraphEdge edge)
           
 String OWLPrettyPrinter.render(OWLGraphEdge edge)
           
 void JSONPrinter.render(OWLGraphEdge edge)
          Deprecated.  
 void CompactGraphClosureRenderer.render(OWLGraphEdge e)
           
abstract  void AbstractClosureRenderer.render(OWLGraphEdge e)
           
 void GraphClosureRenderer.render(OWLGraphEdge e)
           
 void ChadoGraphClosureRenderer.render(OWLGraphEdge e)
           
 void OWLGsonRenderer.render(OWLGraphEdge a)
           
 

Uses of OWLGraphEdge in owltools.sim
 

Method parameters in owltools.sim with type arguments of type OWLGraphEdge
 org.semanticweb.owlapi.model.OWLClassExpression SimEngine.edgeSetToExpression(Set<OWLGraphEdge> edges)
           
 



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