JavaScript is disabled on your browser.
Skip navigation links
Package
Class
Use
Tree
Deprecated
Index
Help
Prev
Next
Frames
No Frames
All Classes
A
B
C
D
G
H
I
L
O
P
R
S
T
A
AbstractRetrieveGolr
- Class in
org.bbop.golr.java
AbstractRetrieveGolr(String)
- Constructor for class org.bbop.golr.java.
AbstractRetrieveGolr
AbstractRetrieveGolr(String, int)
- Constructor for class org.bbop.golr.java.
AbstractRetrieveGolr
alternate_id
- Variable in class org.bbop.golr.java.
RetrieveGolrOntologyClass.GolrOntologyClassDocument
annotation_class
- Variable in class org.bbop.golr.java.
RetrieveGolrOntologyClass.GolrOntologyClassDocument
annotation_class_label
- Variable in class org.bbop.golr.java.
RetrieveGolrOntologyClass.GolrOntologyClassDocument
B
bioentity
- Variable in class org.bbop.golr.java.
RetrieveGolrBioentities.GolrBioentityDocument
bioentity_label
- Variable in class org.bbop.golr.java.
RetrieveGolrBioentities.GolrBioentityDocument
bioentity_name
- Variable in class org.bbop.golr.java.
RetrieveGolrBioentities.GolrBioentityDocument
C
consider
- Variable in class org.bbop.golr.java.
RetrieveGolrOntologyClass.GolrOntologyClassDocument
convert(List<RetrieveGolrAnnotations.GolrAnnotationDocument>)
- Method in class org.bbop.golr.java.
RetrieveGolrAnnotations
convert(List<RetrieveGolrAnnotations.GolrAnnotationDocument>, Map<String, Bioentity>, GafDocument)
- Method in class org.bbop.golr.java.
RetrieveGolrAnnotations
D
database_xref
- Variable in class org.bbop.golr.java.
RetrieveGolrOntologyClass.GolrOntologyClassDocument
defaultRandomWait()
- Method in class org.bbop.golr.java.
AbstractRetrieveGolr
definition_xref
- Variable in class org.bbop.golr.java.
RetrieveGolrOntologyClass.GolrOntologyClassDocument
description
- Variable in class org.bbop.golr.java.
RetrieveGolrOntologyClass.GolrOntologyClassDocument
document_category
- Variable in class org.bbop.golr.java.
RetrieveGolrBioentities.GolrBioentityDocument
document_category
- Variable in class org.bbop.golr.java.
RetrieveGolrOntologyClass.GolrOntologyClassDocument
G
getGolrAnnotations(List<String[]>)
- Method in class org.bbop.golr.java.
RetrieveGolrAnnotations
getGolrAnnotationsForGene(String)
- Method in class org.bbop.golr.java.
RetrieveGolrAnnotations
getGolrAnnotationsForGenes(List<String>)
- Method in class org.bbop.golr.java.
RetrieveGolrAnnotations
getGolrAnnotationsForGenes(List<String>, boolean)
- Method in class org.bbop.golr.java.
RetrieveGolrAnnotations
getGolrAnnotationsForSynonym(String, String)
- Method in class org.bbop.golr.java.
RetrieveGolrAnnotations
getGolrAnnotationsForSynonym(String, List<String>)
- Method in class org.bbop.golr.java.
RetrieveGolrAnnotations
getGolrAnnotationsForSynonym(String, List<String>, boolean)
- Method in class org.bbop.golr.java.
RetrieveGolrAnnotations
getGolrBioentites(String)
- Method in class org.bbop.golr.java.
RetrieveGolrBioentities
getGolrBioentities(List<String[]>)
- Method in class org.bbop.golr.java.
RetrieveGolrBioentities
getGolrOntologyCls(String)
- Method in class org.bbop.golr.java.
RetrieveGolrOntologyClass
getGolrOntologyCls(List<String[]>)
- Method in class org.bbop.golr.java.
RetrieveGolrOntologyClass
getJsonStringFromUri(URI)
- Method in class org.bbop.golr.java.
AbstractRetrieveGolr
getJsonStringFromUri(URI, int)
- Method in class org.bbop.golr.java.
AbstractRetrieveGolr
getRelevantFields()
- Method in class org.bbop.golr.java.
AbstractRetrieveGolr
getRelevantFields()
- Method in class org.bbop.golr.java.
RetrieveGolrAnnotations
getRelevantFields()
- Method in class org.bbop.golr.java.
RetrieveGolrBioentities
getRelevantFields()
- Method in class org.bbop.golr.java.
RetrieveGolrOntologyClass
GolrAnnotationDocument()
- Constructor for class org.bbop.golr.java.
RetrieveGolrAnnotations.GolrAnnotationDocument
GolrAnnotationExtension()
- Constructor for class org.bbop.golr.java.
RetrieveGolrAnnotations.GolrAnnotationExtension
GolrAnnotationExtensionEntry()
- Constructor for class org.bbop.golr.java.
RetrieveGolrAnnotations.GolrAnnotationExtension.GolrAnnotationExtensionEntry
GolrAnnotationExtensionRelation()
- Constructor for class org.bbop.golr.java.
RetrieveGolrAnnotations.GolrAnnotationExtension.GolrAnnotationExtensionEntry.GolrAnnotationExtensionRelation
GolrBioentityDocument()
- Constructor for class org.bbop.golr.java.
RetrieveGolrBioentities.GolrBioentityDocument
GolrOntologyClassDocument()
- Constructor for class org.bbop.golr.java.
RetrieveGolrOntologyClass.GolrOntologyClassDocument
GSON
- Static variable in class org.bbop.golr.java.
AbstractRetrieveGolr
H
handleAnnotationExtension(GeneAnnotation, RetrieveGolrAnnotations.GolrAnnotationDocument)
- Method in class org.bbop.golr.java.
RetrieveGolrAnnotations
I
id
- Variable in class org.bbop.golr.java.
RetrieveGolrBioentities.GolrBioentityDocument
is_obsolete
- Variable in class org.bbop.golr.java.
RetrieveGolrOntologyClass.GolrOntologyClassDocument
isa_partof_closure
- Variable in class org.bbop.golr.java.
RetrieveGolrOntologyClass.GolrOntologyClassDocument
isIndentJson()
- Method in class org.bbop.golr.java.
AbstractRetrieveGolr
isIndentJson()
- Method in class org.bbop.golr.java.
RetrieveGolrAnnotations
isIndentJson()
- Method in class org.bbop.golr.java.
RetrieveGolrBioentities
isIndentJson()
- Method in class org.bbop.golr.java.
RetrieveGolrOntologyClass
L
logRequest(URI)
- Method in class org.bbop.golr.java.
AbstractRetrieveGolr
logRequestError(URI, IOException)
- Method in class org.bbop.golr.java.
AbstractRetrieveGolr
logRetry(URI, IOException, int)
- Method in class org.bbop.golr.java.
AbstractRetrieveGolr
O
only_in_taxon
- Variable in class org.bbop.golr.java.
RetrieveGolrOntologyClass.GolrOntologyClassDocument
only_in_taxon_closure
- Variable in class org.bbop.golr.java.
RetrieveGolrOntologyClass.GolrOntologyClassDocument
org.bbop.golr.java
- package org.bbop.golr.java
P
parseGolrResponse(String, Class<T>)
- Method in class org.bbop.golr.java.
AbstractRetrieveGolr
R
randomWait(int, int)
- Method in class org.bbop.golr.java.
AbstractRetrieveGolr
regulates_closure
- Variable in class org.bbop.golr.java.
RetrieveGolrOntologyClass.GolrOntologyClassDocument
replaced_by
- Variable in class org.bbop.golr.java.
RetrieveGolrOntologyClass.GolrOntologyClassDocument
RetrieveGolrAnnotations
- Class in
org.bbop.golr.java
RetrieveGolrAnnotations(String)
- Constructor for class org.bbop.golr.java.
RetrieveGolrAnnotations
RetrieveGolrAnnotations(String, int, boolean)
- Constructor for class org.bbop.golr.java.
RetrieveGolrAnnotations
RetrieveGolrAnnotations.GolrAnnotationDocument
- Class in
org.bbop.golr.java
RetrieveGolrAnnotations.GolrAnnotationExtension
- Class in
org.bbop.golr.java
RetrieveGolrAnnotations.GolrAnnotationExtension.GolrAnnotationExtensionEntry
- Class in
org.bbop.golr.java
RetrieveGolrAnnotations.GolrAnnotationExtension.GolrAnnotationExtensionEntry.GolrAnnotationExtensionRelation
- Class in
org.bbop.golr.java
RetrieveGolrBioentities
- Class in
org.bbop.golr.java
RetrieveGolrBioentities(String, int)
- Constructor for class org.bbop.golr.java.
RetrieveGolrBioentities
RetrieveGolrBioentities.GolrBioentityDocument
- Class in
org.bbop.golr.java
RetrieveGolrOntologyClass
- Class in
org.bbop.golr.java
RetrieveGolrOntologyClass(String, int)
- Constructor for class org.bbop.golr.java.
RetrieveGolrOntologyClass
RetrieveGolrOntologyClass.GolrOntologyClassDocument
- Class in
org.bbop.golr.java
retryRequest(URI, IOException, int)
- Method in class org.bbop.golr.java.
AbstractRetrieveGolr
S
source
- Variable in class org.bbop.golr.java.
RetrieveGolrBioentities.GolrBioentityDocument
source
- Variable in class org.bbop.golr.java.
RetrieveGolrOntologyClass.GolrOntologyClassDocument
subset
- Variable in class org.bbop.golr.java.
RetrieveGolrOntologyClass.GolrOntologyClassDocument
synonym
- Variable in class org.bbop.golr.java.
RetrieveGolrBioentities.GolrBioentityDocument
synonym
- Variable in class org.bbop.golr.java.
RetrieveGolrOntologyClass.GolrOntologyClassDocument
T
taxon
- Variable in class org.bbop.golr.java.
RetrieveGolrBioentities.GolrBioentityDocument
taxon_label
- Variable in class org.bbop.golr.java.
RetrieveGolrBioentities.GolrBioentityDocument
type
- Variable in class org.bbop.golr.java.
RetrieveGolrBioentities.GolrBioentityDocument
A
B
C
D
G
H
I
L
O
P
R
S
T
Skip navigation links
Package
Class
Use
Tree
Deprecated
Index
Help
Prev
Next
Frames
No Frames
All Classes
Copyright © 2010–2016. All rights reserved.