Uses of Class
org.obolibrary.oboformat.model.OBODoc

Packages that use OBODoc
org.obolibrary.macro.test   
org.obolibrary.obo2owl   
org.obolibrary.obo2owl.test   
org.obolibrary.oboformat.diff   
org.obolibrary.oboformat.model   
org.obolibrary.oboformat.parser   
org.obolibrary.oboformat.writer   
 

Uses of OBODoc in org.obolibrary.macro.test
 

Methods in org.obolibrary.macro.test with parameters of type OBODoc
protected  org.semanticweb.owlapi.model.OWLOntology HomeomorphicRelationTest.convert(OBODoc obodoc, String fn)
           
 

Uses of OBODoc in org.obolibrary.obo2owl
 

Methods in org.obolibrary.obo2owl that return OBODoc
 OBODoc Owl2Obo.convert(org.semanticweb.owlapi.model.OWLOntology ont)
           
 OBODoc Owl2Obo.getObodoc()
           
 OBODoc Obo2Owl.getObodoc()
           
 

Methods in org.obolibrary.obo2owl with parameters of type OBODoc
 org.semanticweb.owlapi.model.OWLOntology Obo2Owl.convert(OBODoc obodoc)
           
 void Owl2Obo.setObodoc(OBODoc obodoc)
           
 void Obo2Owl.setObodoc(OBODoc obodoc)
           
 

Uses of OBODoc in org.obolibrary.obo2owl.test
 

Methods in org.obolibrary.obo2owl.test that return OBODoc
protected  OBODoc OboFormatTestBasics.convert(org.semanticweb.owlapi.model.OWLOntology ontology)
           
protected  OBODoc OboFormatTestBasics.parseOBOFile(File file)
           
protected  OBODoc OboFormatTestBasics.parseOBOFile(String fn)
           
protected  OBODoc OboFormatTestBasics.parseOBOFile(String fn, boolean allowEmptyFrames)
           
protected  OBODoc OboFormatTestBasics.parseOBOURL(String fn)
           
 

Methods in org.obolibrary.obo2owl.test with parameters of type OBODoc
 void EquivalentToTest.checkOBODoc(OBODoc obodoc)
           
protected  org.semanticweb.owlapi.model.OWLOntology OboFormatTestBasics.convert(OBODoc obodoc)
           
protected  org.semanticweb.owlapi.model.OWLOntology OboFormatTestBasics.convert(OBODoc obodoc, String filename)
           
 List<Diff> RoundTripTest.roundTripOBODoc(OBODoc obodoc, boolean isExpectRoundtrip)
           
protected  File OboFormatTestBasics.writeOBO(OBODoc obodoc, String fn)
           
 

Uses of OBODoc in org.obolibrary.oboformat.diff
 

Methods in org.obolibrary.oboformat.diff with parameters of type OBODoc
 List<Diff> OBODocDiffer.getDiffs(OBODoc doc1, OBODoc doc2)
           
 

Uses of OBODoc in org.obolibrary.oboformat.model
 

Fields in org.obolibrary.oboformat.model with type parameters of type OBODoc
protected  Collection<OBODoc> OBODoc.importedOBODocs
           
 

Methods in org.obolibrary.oboformat.model that return types with arguments of type OBODoc
 Collection<OBODoc> OBODoc.getImportedOBODocs()
           
 

Methods in org.obolibrary.oboformat.model with parameters of type OBODoc
 void OBODoc.addImportedOBODoc(OBODoc doc)
           
 void OBODoc.mergeContents(OBODoc extDoc)
           
 

Method parameters in org.obolibrary.oboformat.model with type arguments of type OBODoc
 void OBODoc.setImportedOBODocs(Collection<OBODoc> importedOBODocs)
           
 

Uses of OBODoc in org.obolibrary.oboformat.parser
 

Methods in org.obolibrary.oboformat.parser that return OBODoc
 OBODoc XrefExpander.getTargetDoc(String idSpace)
           
 OBODoc OBOFormatParser.parse(BufferedReader reader)
           
 OBODoc OBOFormatParser.parse(String fn)
          Parses a local file to an OBODoc
 OBODoc OBOFormatParser.parse(URL url)
          Parses a remote URL to an OBODoc
 OBODoc OBOFormatParser.parseURL(String urlstr)
          Parses a remote URL to an OBODoc
 

Methods in org.obolibrary.oboformat.parser with parameters of type OBODoc
 List<String> OBOFormatParser.checkDanglingReferences(OBODoc doc)
           
 boolean OBOFormatParser.parseEntityFrame(OBODoc obodoc)
           
 boolean OBOFormatParser.parseOBODoc(OBODoc obodoc)
           
 boolean OBOFormatParser.parseTermFrame(OBODoc obodoc)
          term-frame ::= nl* '[Term]' nl id-Tag Class-ID EOL { term-frame-clause EOL }
 boolean OBOFormatParser.parseTypedefFrame(OBODoc obodoc)
          Typedef-frame ::= nl* '[Typedef]' nl id-Tag Class-ID EOL { Typedef-frame-clause EOL }
 

Constructors in org.obolibrary.oboformat.parser with parameters of type OBODoc
XrefExpander(OBODoc src)
           
XrefExpander(OBODoc src, OBODoc tgt)
           
XrefExpander(OBODoc src, String targetBase)
           
 

Uses of OBODoc in org.obolibrary.oboformat.writer
 

Methods in org.obolibrary.oboformat.writer with parameters of type OBODoc
 void OBOFormatWriter.write(OBODoc doc, BufferedWriter writer)
           
 void OBOFormatWriter.write(OBODoc doc, String outFile)
           
 

Constructors in org.obolibrary.oboformat.writer with parameters of type OBODoc
OBOFormatWriter.OBODocNameProvider(OBODoc oboDoc)
           
 



Copyright © 2010-2011. All Rights Reserved.