org.obolibrary.obo2owl.test
Class OboFormatTestBasics
java.lang.Object
org.obolibrary.obo2owl.test.OboFormatTestBasics
- Direct Known Subclasses:
- BFOROXrefTest, CAROTest, CHEBITest, ChebiXRefTest, CLTest, DanglingOwl2OboTest, DanglingRestrictionOwl2OboTest, DanglingRoundTripTest, EmptyLinesTest, EquivalentToTest, ExpandExpressionGCITest, ExpandExpressionTest, ExpandSynapsedToTest, FlyXPTest, GCIQualifierTest, GOTest, HeaderLostBug, HomeomorphicRelationTest, ManchesterSyntaxToolTest, Obo2OwlOldMappingTest, Obo2OwlTest, OBODocDifferTest, OboEscapeCharsTest, ObsoleteTermTest, Owl2OboDefTest, Owl2OboTest, PropertyChainTest, RelationShorthandTest, RoundTripTest, SBOTest, SimpleGOTest, SingleIntersectionOfTagTest, SubsetTest, SynonymTest, TagTest, UnionOfTest, UnmappableExpressionsTest, XPBridgeFileTest, XrefExpanderTest
public class OboFormatTestBasics
- extends Object
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
OboFormatTestBasics
public OboFormatTestBasics()
parseOBOURL
protected OBODoc parseOBOURL(String fn)
throws IOException
- Throws:
IOException
parseOBOFile
protected OBODoc parseOBOFile(String fn)
throws IOException
- Throws:
IOException
parseOBOFile
protected OBODoc parseOBOFile(String fn,
boolean allowEmptyFrames)
throws IOException
- Throws:
IOException
parseOBOFile
protected OBODoc parseOBOFile(File file)
throws IOException
- Throws:
IOException
parseOWLFile
protected org.semanticweb.owlapi.model.OWLOntology parseOWLFile(String fn)
throws org.semanticweb.owlapi.model.OWLOntologyCreationException
- Throws:
org.semanticweb.owlapi.model.OWLOntologyCreationException
convert
protected org.semanticweb.owlapi.model.OWLOntology convert(OBODoc obodoc)
throws org.semanticweb.owlapi.model.OWLOntologyCreationException
- Throws:
org.semanticweb.owlapi.model.OWLOntologyCreationException
convert
protected org.semanticweb.owlapi.model.OWLOntology convert(OBODoc obodoc,
String filename)
throws org.semanticweb.owlapi.model.OWLOntologyCreationException,
org.semanticweb.owlapi.model.OWLOntologyStorageException,
IOException
- Throws:
org.semanticweb.owlapi.model.OWLOntologyCreationException
org.semanticweb.owlapi.model.OWLOntologyStorageException
IOException
convert
protected OBODoc convert(org.semanticweb.owlapi.model.OWLOntology ontology)
throws org.semanticweb.owlapi.model.OWLOntologyCreationException
- Throws:
org.semanticweb.owlapi.model.OWLOntologyCreationException
writeOBO
protected File writeOBO(OBODoc obodoc,
String fn)
throws IOException
- Throws:
IOException
writeOWL
protected File writeOWL(org.semanticweb.owlapi.model.OWLOntology ontology,
String filename)
throws org.semanticweb.owlapi.model.OWLOntologyStorageException
- Throws:
org.semanticweb.owlapi.model.OWLOntologyStorageException
writeOWL
protected File writeOWL(org.semanticweb.owlapi.model.OWLOntology ontology,
String filename,
org.semanticweb.owlapi.model.OWLOntologyFormat format)
throws org.semanticweb.owlapi.model.OWLOntologyStorageException
- Throws:
org.semanticweb.owlapi.model.OWLOntologyStorageException
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