org.obolibrary.cli
Class OBORunner

java.lang.Object
  extended by org.obolibrary.cli.OBORunner
Direct Known Subclasses:
OBORunnerGui

public class OBORunner
extends Object

command line access to obo2owl


Constructor Summary
OBORunner()
           
 
Method Summary
protected static void buildAllOboOwlFiles(String dir, OBORunnerConfiguration config, org.apache.log4j.Logger logger)
          makes OWL from all selected ontologies.
static void main(String[] args)
           
protected static void runConversion(OBORunnerConfiguration config, org.apache.log4j.Logger logger)
           
static void showMemory()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

OBORunner

public OBORunner()
Method Detail

main

public static void main(String[] args)
                 throws IOException,
                        org.semanticweb.owlapi.model.OWLOntologyCreationException,
                        org.semanticweb.owlapi.model.OWLOntologyStorageException,
                        OBOFormatDanglingReferenceException,
                        URISyntaxException
Throws:
IOException
org.semanticweb.owlapi.model.OWLOntologyCreationException
org.semanticweb.owlapi.model.OWLOntologyStorageException
OBOFormatDanglingReferenceException
URISyntaxException

runConversion

protected static void runConversion(OBORunnerConfiguration config,
                                    org.apache.log4j.Logger logger)
                             throws IOException,
                                    OBOFormatDanglingReferenceException,
                                    org.semanticweb.owlapi.model.OWLOntologyCreationException,
                                    org.semanticweb.owlapi.model.OWLOntologyStorageException,
                                    URISyntaxException
Throws:
IOException
OBOFormatDanglingReferenceException
org.semanticweb.owlapi.model.OWLOntologyCreationException
org.semanticweb.owlapi.model.OWLOntologyStorageException
URISyntaxException

showMemory

public static void showMemory()

buildAllOboOwlFiles

protected static void buildAllOboOwlFiles(String dir,
                                          OBORunnerConfiguration config,
                                          org.apache.log4j.Logger logger)
                                   throws IOException
makes OWL from all selected ontologies. These are downloaded from the OBO metadata file

Parameters:
dir -
Throws:
IOException


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