org.obolibrary.oboformat.writer
Class OBOFormatWriter
java.lang.Object
org.obolibrary.oboformat.writer.OBOFormatWriter
public class OBOFormatWriter
- extends Object
- Author:
- Shahid Manzoor
Method Summary |
boolean |
isCheckStructure()
|
void |
setCheckStructure(boolean isCheckStructure)
|
static void |
sortTermClauses(List<Clause> clauses)
Sort a list of term frame clauses according to in the OBO format
specified tag and value order. |
void |
write(BufferedReader reader,
BufferedWriter writer)
|
void |
write(Clause clause,
BufferedWriter writer,
OBOFormatWriter.NameProvider nameProvider)
|
void |
write(Frame frame,
BufferedWriter writer,
OBOFormatWriter.NameProvider nameProvider)
|
void |
write(OBODoc doc,
BufferedWriter writer)
|
void |
write(OBODoc doc,
String outFile)
|
void |
write(String fn,
BufferedWriter writer)
|
void |
write(URL url,
BufferedWriter writer)
|
void |
writeDef(Clause clause,
BufferedWriter writer)
|
void |
writeHeader(Frame frame,
BufferedWriter writer,
OBOFormatWriter.NameProvider nameProvider)
|
void |
writePropertyValue(Clause clause,
BufferedWriter writer)
|
void |
writeSynonym(Clause clause,
BufferedWriter writer)
|
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
OBOFormatWriter
public OBOFormatWriter()
isCheckStructure
public boolean isCheckStructure()
setCheckStructure
public void setCheckStructure(boolean isCheckStructure)
write
public void write(String fn,
BufferedWriter writer)
throws IOException
- Throws:
IOException
write
public void write(URL url,
BufferedWriter writer)
throws IOException
- Throws:
IOException
write
public void write(BufferedReader reader,
BufferedWriter writer)
throws IOException
- Throws:
IOException
write
public void write(OBODoc doc,
String outFile)
throws IOException
- Throws:
IOException
write
public void write(OBODoc doc,
BufferedWriter writer)
throws IOException
- Throws:
IOException
writeHeader
public void writeHeader(Frame frame,
BufferedWriter writer,
OBOFormatWriter.NameProvider nameProvider)
throws IOException
- Throws:
IOException
write
public void write(Frame frame,
BufferedWriter writer,
OBOFormatWriter.NameProvider nameProvider)
throws IOException
- Throws:
IOException
writeDef
public void writeDef(Clause clause,
BufferedWriter writer)
throws IOException
- Throws:
IOException
writePropertyValue
public void writePropertyValue(Clause clause,
BufferedWriter writer)
throws IOException
- Throws:
IOException
writeSynonym
public void writeSynonym(Clause clause,
BufferedWriter writer)
throws IOException
- Throws:
IOException
write
public void write(Clause clause,
BufferedWriter writer,
OBOFormatWriter.NameProvider nameProvider)
throws IOException
- Throws:
IOException
sortTermClauses
public static void sortTermClauses(List<Clause> clauses)
- Sort a list of term frame clauses according to in the OBO format
specified tag and value order.
- Parameters:
clauses
-
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