org.obolibrary.cli
Class OBORunner
java.lang.Object
org.obolibrary.cli.OBORunner
- Direct Known Subclasses:
- OBORunnerGui
public class OBORunner
- extends Object
command line access to obo2owl
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
OBORunner
public OBORunner()
main
public static void main(String[] args)
throws IOException,
org.semanticweb.owlapi.model.OWLOntologyCreationException,
org.semanticweb.owlapi.model.OWLOntologyStorageException,
OBOFormatDanglingReferenceException,
URISyntaxException
- Throws:
IOException
org.semanticweb.owlapi.model.OWLOntologyCreationException
org.semanticweb.owlapi.model.OWLOntologyStorageException
OBOFormatDanglingReferenceException
URISyntaxException
runConversion
protected static void runConversion(OBORunnerConfiguration config,
org.apache.log4j.Logger logger)
throws IOException,
OBOFormatDanglingReferenceException,
org.semanticweb.owlapi.model.OWLOntologyCreationException,
org.semanticweb.owlapi.model.OWLOntologyStorageException,
URISyntaxException
- Throws:
IOException
OBOFormatDanglingReferenceException
org.semanticweb.owlapi.model.OWLOntologyCreationException
org.semanticweb.owlapi.model.OWLOntologyStorageException
URISyntaxException
showMemory
public static void showMemory()
buildAllOboOwlFiles
protected static void buildAllOboOwlFiles(String dir,
OBORunnerConfiguration config,
org.apache.log4j.Logger logger)
throws IOException
- makes OWL from all selected ontologies.
These are downloaded from the OBO metadata file
- Parameters:
dir
- config
- logger
-
- Throws:
IOException
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