Uses of Class
org.obolibrary.oboformat.model.Frame

Packages that use Frame
org.obolibrary.obo2owl   
org.obolibrary.oboformat.diff   
org.obolibrary.oboformat.model   
org.obolibrary.oboformat.parser   
org.obolibrary.oboformat.writer   
 

Uses of Frame in org.obolibrary.obo2owl
 

Methods in org.obolibrary.obo2owl with parameters of type Frame
protected  boolean Owl2Obo.handleDuplicateClause(Frame frame, Clause clause)
          Handle a duplicate clause in a frame during translation.
 void Obo2Owl.trHeaderFrame(Frame headerFrame)
           
 org.semanticweb.owlapi.model.OWLClassExpression Obo2Owl.trTermFrame(Frame termFrame)
           
 org.semanticweb.owlapi.model.OWLNamedObject Obo2Owl.trTypedefFrame(Frame typedefFrame)
           
 

Uses of Frame in org.obolibrary.oboformat.diff
 

Methods in org.obolibrary.oboformat.diff that return Frame
 Frame Diff.getFrame1()
           
 Frame Diff.getFrame2()
           
 

Methods in org.obolibrary.oboformat.diff with parameters of type Frame
 void Diff.setFrame1(Frame frame1)
           
 void Diff.setFrame2(Frame frame2)
           
 

Constructors in org.obolibrary.oboformat.diff with parameters of type Frame
Diff(String ftype, String type, Frame f1, Frame f2, Clause c, int n)
           
Diff(String ftype, String type, Frame f1, int n)
           
 

Uses of Frame in org.obolibrary.oboformat.model
 

Fields in org.obolibrary.oboformat.model declared as Frame
protected  Frame OBODoc.headerFrame
           
 

Fields in org.obolibrary.oboformat.model with type parameters of type Frame
protected  Collection<Frame> OBODoc.annotationFrames
           
protected  Map<String,Frame> OBODoc.instanceFrameMap
           
protected  Map<String,Frame> OBODoc.termFrameMap
           
protected  Map<String,Frame> OBODoc.typedefFrameMap
           
 

Methods in org.obolibrary.oboformat.model that return Frame
 Frame OBODoc.getHeaderFrame()
           
 Frame OBODoc.getInstanceFrame(String id)
           
 Frame OBODoc.getTermFrame(String id)
           
 Frame OBODoc.getTermFrame(String id, boolean followImport)
           
 Frame OBODoc.getTypedefFrame(String id)
           
 Frame OBODoc.getTypedefFrame(String id, boolean followImports)
           
 

Methods in org.obolibrary.oboformat.model that return types with arguments of type Frame
 Collection<Frame> OBODoc.getInstanceFrames()
           
 Collection<Frame> OBODoc.getTermFrames()
           
 Collection<Frame> OBODoc.getTypedefFrames()
           
 

Methods in org.obolibrary.oboformat.model with parameters of type Frame
 void OBODoc.addFrame(Frame f)
           
 void OBODoc.addInstanceFrame(Frame f)
           
 void OBODoc.addTermFrame(Frame f)
           
 void OBODoc.addTypedefFrame(Frame f)
           
 void Frame.merge(Frame extFrame)
           
 void OBODoc.setHeaderFrame(Frame headerFrame)
           
 

Constructors in org.obolibrary.oboformat.model with parameters of type Frame
FrameStructureException(Frame frame, String msg)
           
 

Uses of Frame in org.obolibrary.oboformat.parser
 

Methods in org.obolibrary.oboformat.parser that return Frame
protected  Frame XrefExpander.Rule.getTargetFrame(String id)
           
 

Methods in org.obolibrary.oboformat.parser with parameters of type Frame
abstract  void XrefExpander.Rule.expand(Frame sf, String id, String xref)
           
 void XrefExpander.EquivalenceExpansion.expand(Frame sf, String id, String xref)
           
 void XrefExpander.HasSubClassExpansion.expand(Frame sf, String id, String xref)
           
 void XrefExpander.GenusDifferentiaExpansion.expand(Frame sf, String id, String xref)
           
 void XrefExpander.ReverseGenusDifferentiaExpansion.expand(Frame sf, String id, String xref)
           
 void XrefExpander.IsaExpansion.expand(Frame sf, String id, String xref)
           
 void XrefExpander.RelationshipExpansion.expand(Frame sf, String id, String xref)
           
protected  boolean OBOFormatParser.parseHeaderClause(Frame h)
           
protected  boolean OBOFormatParser.parseHeaderClauseNl(Frame h)
          header-clause ::= format-version-TVP | ...
 boolean OBOFormatParser.parseHeaderFrame(Frame h)
           
protected  boolean OBOFormatParser.parseIdLine(Frame f)
           
protected  boolean OBOFormatParser.parseTermFrameClauseEOL(Frame f)
           
protected  boolean OBOFormatParser.parseTypedefFrameClauseEOL(Frame f)
           
 

Uses of Frame in org.obolibrary.oboformat.writer
 

Methods in org.obolibrary.oboformat.writer with parameters of type Frame
 void OBOFormatWriter.write(Frame frame, BufferedWriter writer, OBOFormatWriter.NameProvider nameProvider)
           
 void OBOFormatWriter.writeHeader(Frame frame, BufferedWriter writer, OBOFormatWriter.NameProvider nameProvider)
           
 



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